Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01488 ATGGTCAACATGGAGCGAGTGATTTCCTCTTTCATGCATTTGTTTCTTCTTTGGGCAATTTTGGTGCTTCACTTGGTGCTCAAGGTTTCTGGCAATGTAGAAGTTGATGCCCTGAATGCATTGAAGAACAGTATAAGTGATCCTAACAATGTTCTTAAAAGTTGGGATTCTACCCTTGCCACTCCTTGCGCATGGATTCATGTTACTTGCAACAATAAAAATAGTGTGACCCGTGTTGATCTTGGAAATGCAAACCTTTCGGGTCATCTTGTTCCACAGCTTGGTCAACTCCCAAATTTGCAATACTTGGAACTTTATAGTAATAATATAATTGGGGAAATCCCAGATGAGCTTGGAAGTTTGAAAAACTTGATTAGCTTGGATCTCTACTTGAACAACATTACTGGTCCCATTCCGGACAACTTGGCCAACCTTAAAAAATTGCGTTTCCTGCGCCTCAACAATAACAGCTTGTCAGGAAATATTCCAATGCTATTGACCACTATTGCTTCACTACAAGAGCTTGATTTATCCAACAACAACTTAACAGGAGATGTCCCAGTAAATGGTTCTTTTTCAGTTTTTACACTCATCAGTTTTAAGAATAATCCTTTATTGAATCAAACCACTTTGACTCCACCAGCTCCTACACCACAAAAAAATCCTTCAGGTAATGGTAGCAGAGCTATTGGAGCCATTGTTGTAGCCATTGTAGCCATTGCTGGAGGAATTGTTGTGGGTGTTGCACTGTTGTTTGCGGCCCTTGTAATTGCACTTTATTGGAAAAAAAGGAAGCCACGTGATTATTTCTTTGATGTAGCGGCTGAGGAGGATCCTCAAGTTCACCTTGGTCAACTTAAAAGGTTTTCACTACGTGAATTGGTAGTTGCAACCGATGGCTTTCATAACAAATACATTCTTGGTAGTGGTGAATCTGGCAAGGTTTATAAAGGACGCTTATCAGATGGTAGCCTTGTAGCTATAAAAAGACTTAAAGTGGAACGCACCCAGGATAGGGAGTTGCAGTTTCAAACTGAAGTGGAAACGATCAGCATGGCTGCACATCAGAATTTGCTTCGCCTGCTTGGGTTTTGTATGACACCTACTGAACGCTTGCTTGTGTATCCTTACATGGTTAATGGAAGTGTGGCTTCAAGTTTACGAGACCGTAGGAAATCACAACTACCACTTGAATGGGGAATGCGGAAGCGTATTGCTCTTGGGGCTGCTAGGGGGCTTGCTTATTTGCATGATGGTTGTGACCCAAAGATCATTCATCGTGATGTCAAAGCTACAAATATATTGTTGGATAAATACTTTGAAGCAGTCATTGGTGATTTTGGATTAGCAAAGTGTATGAATTATAAAGACACTCATGTTACTTGTTCAGTACGTGGTACTATTGGCCATATACCACCAGAGTACCTCTCAACTGGAAAAGCTTCAGATAAGACTGATGTTTATGGATATGGCGTGCTGCTTCTAGAAATAATAACTGGACAGAAATCTTTTGCTTTAGCACAACTCGCCAATGATCATGGTCTCTTGTTCCTTGATTGGGTGAAAGTACTTCTTAAAGAGAAGAGGTTGGAAACACTGGTGGATGCAGATTTAGAGGGGAATTTTGAGGAGGGGGAAGTAGAAGAGGTAATCCAAGTGGCTTTGCTCTGCACACAGAGCTCCCCTTCGGAAAGACCCAAGATGTCTGAGGTGGTGAGAATGCTAGAAGGTGAAGGTTTGGATGAAAAGTGGGATAAATGGTGGCAAAAAGAGGATATGATCAAACAAAATTTCGACCCCACCAATCTCCACACAACTTATTCGCCATTATTTGACTCAACTTCAGATATTCCGCTAGATGATGAACTACCAAGTCCTAGATGA 1884 0.4124 MVNMERVISSFMHLFLLWAILVLHLVLKVSGNVEVDALNALKNSISDPNNVLKSWDSTLATPCAWIHVTCNNKNSVTRVDLGNANLSGHLVPQLGQLPNLQYLELYSNNIIGEIPDELGSLKNLISLDLYLNNITGPIPDNLANLKKLRFLRLNNNSLSGNIPMLLTTIASLQELDLSNNNLTGDVPVNGSFSVFTLISFKNNPLLNQTTLTPPAPTPQKNPSGNGSRAIGAIVVAIVAIAGGIVVGVALLFAALVIALYWKKRKPRDYFFDVAAEEDPQVHLGQLKRFSLRELVVATDGFHNKYILGSGESGKVYKGRLSDGSLVAIKRLKVERTQDRELQFQTEVETISMAAHQNLLRLLGFCMTPTERLLVYPYMVNGSVASSLRDRRKSQLPLEWGMRKRIALGAARGLAYLHDGCDPKIIHRDVKATNILLDKYFEAVIGDFGLAKCMNYKDTHVTCSVRGTIGHIPPEYLSTGKASDKTDVYGYGVLLLEIITGQKSFALAQLANDHGLLFLDWVKVLLKEKRLETLVDADLEGNFEEGEVEEVIQVALLCTQSSPSERPKMSEVVRMLEGEGLDEKWDKWWQKEDMIKQNFDPTNLHTTYSPLFDSTSDIPLDDELPSPR 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01488 627 SUPERFAMILY L domain-like 34 206 - -
Cca09g01488 627 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Cca09g01488 627 Gene3D Ribonuclease Inhibitor 31 215 IPR032675 -
Cca09g01488 627 ProSiteProfiles Protein kinase domain profile. 301 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01488 627 Gene3D Transferase(Phosphotransferase) domain 1 378 596 - -
Cca09g01488 627 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Cca09g01488 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Cca09g01488 627 Pfam Protein tyrosine and serine/threonine kinase 305 575 IPR001245 GO:0004672|GO:0006468
Cca09g01488 627 SUPERFAMILY Protein kinase-like (PK-like) 281 576 IPR011009 -
Cca09g01488 627 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Cca09g01488 627 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 619 - -
Cca09g01488 627 SMART serkin_6 301 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01488 627 PANTHER BNAA08G11770D PROTEIN 13 619 IPR031048 GO:0004675|GO:0005102|GO:0006468
Cca09g01488 627 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01488 Cca-Chr9 38200629 38207823 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01488 4 627 Receptor kinase-like Gene Family AT4G33430 63.704 0.0 797
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Cca09g01488 PK_Tyr_Ser-Thr 2.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01488 K13416 - gmx:100804180 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01488 09 38200629 38207823 Cca08g02703 08 61438746 61445464 PCT