Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01487 ATGGAGCCAGTTATTAATTTTTCATCTTACATGCGTTTCTTTCTTCTTTCGGCATTTTTGATGCTTCACTTGGTCTTGGTGCCTAACGTTTCTGCCAATAGAGAAGGTGATGCCCTGAATGCTTTGAAGAAAAGTATTAGTGATCCTAACAATGTTCTTCAAAGTTGGGATTCTACCCTTGTCACTCCTTGCACATGGTTTCGTGTTACTTGCAACAATAAAAATAGCGTGACCCGTGTTGATCTTGGAAATGCAAACCTTTCGGGTCAACTTGTTCCACAGCTTGGTCAACTCCCAAATTTGCGATACTTGGAACTTTATAGTAATAATATAACTGGGAAAATCCCAGATGAGCTTGGAAGTTTGACAAAATTGGTGACCTTGGATCTTCACTTGAACAACATTACTGGTTCCATTCCAGACAACTTGGCCAACCTTAAAAATCTACGTTTCTTGCGTCTCAACAATAACAGCTTGTCAGGAAAAATTCCTGTGTGTTTGACCACTATTGCTTCACTACAAGTGCTTGATTTCTCAAACAACAACTTAACAGGAGATATCCCCATCAATGGTTCTTTTTCACTTCTTACTCCCAACAGTTTTAAGAATAATCCTTTATTGAATCTAAATATGACTGCACCAGCTCTTACACCGCAACAAAATCCTTCAGGTAATGGAAACATTGTTATTGGAGCCATTGTTGGAGGAGTTGCTGTGACTGTTACACTGTTGTTTGCCGCGGCCCTTGTGATTACACTTGTTTGTTGGAATAAAAGAGGGAAGCCAAAGGATTATTTCATTGATGTTGCCGCTGAGGAGGATGATCATGAATTTCACCTTTCTCAGCTTAAAAGATTTTCACTGCGTGAACTGCAAGTTGCAACAGATAGCTTTGATAACAAAAACATTATTGGTAGAGGTGCATTTAGCAAGGTCTATAAAGGACGCTTAACAAATGGTGAGCTTGTATCAGTAAAAAGACTTAAAGAGGAACGCAAGCAGGGTGGGGACTTGCAATTTCAAACTGAAGTGGAAATGATCGGCATGGCAAAACATCCAAATTTGCTTCGCCTGCATGGGTTTTGTATGACACCTACTGAACGCTTGCTTGTGTATCCTTTCATGGTTAATGGAAGTTTAGCTTCATGTTTACGAGACCGTCCGGAATCAAAACCACCACTTAAATGGCCAACAAGGAAGTGTATTGCTTTGGGAGCTGCTAGAGGGCTTGCTTATTTGCATGATGGTTGTGACCCAAAGATCATTCATCGTGATGTCAAAGCTGCAAATATATTGTTGGATGAGGAGTTTGAAGCATTCATTGGTGATTTTGGATTAGCAAAGCTTATGAATTATAAAGATACTGATGTTATTTCTTCGATACGTGGTACTATTGGTCATATGGCACCAGAGTACCTTTCAACTGGAAACACTTCAGATAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAAATAATAACTGGGCAGAGGGCTTTTGATTTAGCACAACTTGCCAATGATGATGATCTCTTGTTCCTTGATTGGGTGAAAGCACTTTTGAAAGAAAAGAGGTTGGAGACACTGGTGGATGCAGATTTACGAGGAAATTACGATGAGAGGGAAGTGGAGGAGGTAATCCAAGTGGCCTTGCTATGCACACAAAACTCCCCTTTGGAAAGACCCAAGATGTACGATGTGGTGAGAATGCTAGAAGGTGAAGGTTTGGCAGAAAAATGGGATGAATGGTGGCAGAAAGAGGATGTGAATTATGTGATCCAGCTAGATTTTGACCCCACCAATTCTTGTTGCCAATCATCAGATGAAATGTCAGGTCCTAGATGA 1848 0.4037 MEPVINFSSYMRFFLLSAFLMLHLVLVPNVSANREGDALNALKKSISDPNNVLQSWDSTLVTPCTWFRVTCNNKNSVTRVDLGNANLSGQLVPQLGQLPNLRYLELYSNNITGKIPDELGSLTKLVTLDLHLNNITGSIPDNLANLKNLRFLRLNNNSLSGKIPVCLTTIASLQVLDFSNNNLTGDIPINGSFSLLTPNSFKNNPLLNLNMTAPALTPQQNPSGNGNIVIGAIVGGVAVTVTLLFAAALVITLVCWNKRGKPKDYFIDVAAEEDDHEFHLSQLKRFSLRELQVATDSFDNKNIIGRGAFSKVYKGRLTNGELVSVKRLKEERKQGGDLQFQTEVEMIGMAKHPNLLRLHGFCMTPTERLLVYPFMVNGSLASCLRDRPESKPPLKWPTRKCIALGAARGLAYLHDGCDPKIIHRDVKAANILLDEEFEAFIGDFGLAKLMNYKDTDVISSIRGTIGHMAPEYLSTGNTSDKTDVFGYGVMLLEIITGQRAFDLAQLANDDDLLFLDWVKALLKEKRLETLVDADLRGNYDEREVEEVIQVALLCTQNSPLERPKMYDVVRMLEGEGLAEKWDEWWQKEDVNYVIQLDFDPTNSCCQSSDEMSGPR 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01487 615 Gene3D Phosphorylase Kinase; domain 1 266 374 - -
Cca09g01487 615 ProSiteProfiles Protein kinase domain profile. 298 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01487 615 Pfam Leucine Rich Repeat 100 122 IPR001611 GO:0005515
Cca09g01487 615 PANTHER BNAA08G11770D PROTEIN 17 593 IPR031048 GO:0004675|GO:0005102|GO:0006468
Cca09g01487 615 Gene3D Transferase(Phosphotransferase) domain 1 375 592 - -
Cca09g01487 615 Gene3D Ribonuclease Inhibitor 31 214 IPR032675 -
Cca09g01487 615 SMART serkin_6 298 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01487 615 ProSiteProfiles Leucine-rich repeat profile. 124 147 IPR001611 GO:0005515
Cca09g01487 615 SUPERFAMILY L domain-like 34 211 - -
Cca09g01487 615 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
Cca09g01487 615 SUPERFAMILY Protein kinase-like (PK-like) 278 573 IPR011009 -
Cca09g01487 615 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 17 593 - -
Cca09g01487 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Cca09g01487 615 Pfam Protein tyrosine and serine/threonine kinase 301 572 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01487 Cca-Chr9 38185699 38196722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01487 12 592 Receptor kinase-like Gene Family AT4G33430 65.142 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Cca09g01487 Pkinase 6.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01487 K13416 - gmx:100804180 868.611