Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01483 ATGGATGTTGTATCTTTGAGCTCAAGTTCAAGCCTAAGCATGTCCATGCCCTTTCAATTTCACGGCCACAACAAGCAAAGAGGCTCTAATGTAAGGTTTGGCACCGTTTCATGCAGAGCCACAAGACAAGAAAGCTTGTACAAAATATTGTCCGTGAGTCCAGGAAGTGCAACAATGGATGAGATTAAGAGGGCTTATAGATCAATGGCTCTTCGGTACCACCCTGATGTGTGCCATGATCCTTCGATGAAAGAGGAGTCAACGAGGATGTTTGTGCAACTAAATGCAGCATACGAGACCTTGTCCAATCCAAATCTTCGTGCACAGTACGACCATGAATTGGGCTTGAGAAGCAAAGTGGTCATGAATATTAATGTTGGTAGTGATGATCATGAGAGATGGGGAAGTGGGTTGCATGAGGAAGTGATTGAGTTGAAGACAAGGTCTCGAAGACGTATGGGGCACAAAGGGGGGTCGGGGTCATGTTCATGGGGTAGTACCTCCAGAATGAGGACACAAAACATGAAAGGGAGGCATTCATTTTCTTAA 549 0.4517 MDVVSLSSSSSLSMSMPFQFHGHNKQRGSNVRFGTVSCRATRQESLYKILSVSPGSATMDEIKRAYRSMALRYHPDVCHDPSMKEESTRMFVQLNAAYETLSNPNLRAQYDHELGLRSKVVMNINVGSDDHERWGSGLHEEVIELKTRSRRRMGHKGGSGSCSWGSTSRMRTQNMKGRHSFS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01483 182 PRINTS DnaJ domain signature 48 66 IPR001623 -
Cca09g01483 182 PRINTS DnaJ domain signature 66 81 IPR001623 -
Cca09g01483 182 PRINTS DnaJ domain signature 86 106 IPR001623 -
Cca09g01483 182 MobiDBLite consensus disorder prediction 160 182 - -
Cca09g01483 182 CDD DnaJ 47 103 IPR001623 -
Cca09g01483 182 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 6 176 - -
Cca09g01483 182 MobiDBLite consensus disorder prediction 149 182 - -
Cca09g01483 182 ProSiteProfiles dnaJ domain profile. 45 114 IPR001623 -
Cca09g01483 182 SMART dnaj_3 44 106 IPR001623 -
Cca09g01483 182 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 6 176 - -
Cca09g01483 182 Pfam DnaJ domain 46 111 IPR001623 -
Cca09g01483 182 ProSitePatterns Nt-dnaJ domain signature. 91 110 IPR018253 -
Cca09g01483 182 Gene3D DnaJ domain 33 126 IPR036869 -
Cca09g01483 182 SUPERFAMILY Chaperone J-domain 33 110 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01483 Cca-Chr9 38161222 38161900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01483 47 111 C2H2 Transcription Factor Family AT1G74250 41.791 7.85e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01483 - - gmx:100811478 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01483 09 38161222 38161900 Cca08g02698 08 61380445 61381150 PCT