Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01470 ATGATGGGTTCAAGCACCACTGCCGACGACCTATTCCCTCTCTTCGATAAGTATGGGAAGGTCGTTGACATCTTCATTCCCAAAGATCGAAGGACCGGTGAGTCGAGGGGTTTTGCTTTTGTGCGTTACAAGTATGCTGATGAGGCTCAGAAGGCCGTTGATAGGCTTGATGGAAGAATGGTTGATGGTCGTGAAATAACTGTCCAGTTTGCGAAATACGGGCCTAATGCTGAGAGGATTCACAAAGGAAGGATTATTGAAACAGCCCAGAGATCAAGGCACAGGTCAAGGAGCCGCAGTCCCAGGAAAAGGTATCGTGATGATTACAAAGACCGGGATTATAAGAGGAGAAGTCGTAGCAGAAGCTATGATAGGTATGAACGTGACAGGCACCGGGGGAGAGACAAAGATTACCGTCGCAGAAGCAGGAGCCGAAGTACTAGTCTTGATTACAAAGGTCGTGGGAGGGGACGCCATGATGATGATTATCATAGTAGAAGCCGGAGCAGATCAGTTGATAGCCGATCCCCTGCACGACGCAGTCCTAGTCCTCGAAGGAGTCCTTCCCCTCAAAGGAGCACTTCCCCTCGAAGGAGTTTTTCCCCAATGAAAAGTCCACGGGGTGAAAGTCCTGCGAATCGTAGCCGTGATGGACATTCTCCTACCCCTCGCAGTGTCTCACCTCGTGGTCGCCCTGATGCTTCGCGAAGCCCTTCCCCTCGTAATTCAAATGGTGATGAATAA 744 0.5027 MMGSSTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIETAQRSRHRSRSRSPRKRYRDDYKDRDYKRRSRSRSYDRYERDRHRGRDKDYRRRSRSRSTSLDYKGRGRGRHDDDYHSRSRSRSVDSRSPARRSPSPRRSPSPQRSTSPRRSFSPMKSPRGESPANRSRDGHSPTPRSVSPRGRPDASRSPSPRNSNGDE 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01470 247 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 247 - -
Cca09g01470 247 MobiDBLite consensus disorder prediction 176 201 - -
Cca09g01470 247 MobiDBLite consensus disorder prediction 102 175 - -
Cca09g01470 247 SMART rrm1_1 2 69 IPR000504 GO:0003723
Cca09g01470 247 Gene3D - 2 82 IPR012677 -
Cca09g01470 247 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 4 247 - -
Cca09g01470 247 MobiDBLite consensus disorder prediction 81 247 - -
Cca09g01470 247 SUPERFAMILY RNA-binding domain, RBD 4 79 IPR035979 GO:0003676
Cca09g01470 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 67 IPR000504 GO:0003723
Cca09g01470 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 73 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01470 Cca-Chr9 38023281 38029194 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01470 10 71 Eukaryotic Initiation Factors Gene Family AT3G11400 37.097 2.44e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01470 K12891 - gmx:100778928 295.434