Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01468 atggattctgcattctccGTCACCACCACCGCGCACATGGCGTTTTTCAGAGCGCTCCACCGTCATTTCGCCGTAGCTCCTCAACGCGCCTTCCTCCGCCGCAAACTCAAATGCGTCGTTGCTTCCTACAGCAACTGCTCCCGCACTCCGTGTTCCTTCGCTTCCGCGCCATCGCCTTCCTCGCTCCGCTCATACGGTGGACTGCTCCTTCGAACGCGGTGTTCTTTGCGCTGCATTTCGAGCTCCGCCGCTTCTTTTGCTggcggtgggagtggcggcggcggaatcggcgacggtggcggaggtggaggttctggcggtgAGTCTGGAGATGGTAATATCAAATTGGTTGGAGACACGGCTCAGGAGCTTTCCTCACTCTCGCCTGATGTTATCATTCTCGATGTTTCCGGAATGGTGTGCGGGGGATGTGCGGCAACTGTGAAAAGGATACTGGAAAGTCGACCACAGGTGTCATCTGTTAGTGTAAATTTAACTACAGAGACAGCAATAGTTTGGCCTGTATCTGAAGCAAAAAATGCACCAAATTGGCAAAAGCAATTAGGAGAGGCACTTGCAGAGCATTTAACTAGCTGTGGTTATAATTCTAGCCTTCGAGATTCAGCAAGAGACAGTTTCCTCCAAATTTTTGAAAGGAAGATGGAGGAAAGACATAGACAGTTAAGACAATGTGGTCGTGAACTAGCTGTTTCTTGGGCTCTATGTGCTGTCTGTCTTGTTGGCCATTTCTCTCATTTCTTTGCACCAAAGGCACCATGGATCCATGCATTTCACTCCATTGGGTTTCACCTATCCTTGTCTTTGTTTACGTTGCTTGGTCCTGGCCGCCAACTTATCCTTGATGGCTTAAAAAGCCTTCTTAAAAGGACGCCTAACATGAACACTTTAGTTGGTCTTGGGGCTTTATCATCTTTTACTGTCAGTTCACTTGCCACCCTGCTGCCAAAATTGGGTTGGAAGGCTTTCTTTGAGGAACCAATTATGCTAATTGCATTTGTGTTGTTAGGAAGAAATCTTGAACAGAGAGCTAAAATTAAAGCAACCAGTGATATGACAGGACTTCTTAGTTTATTGCCACCAAAGGCTCGCCTTTTAGTGAACAATGGGGAAACAGAGGTTGGCTTGGTTGTTGAAGTTCCTTCTGACAGTATTTCTGTTGGAGACCAAATTATTGTATTACCTGGAGACCGTGTTCCAGCTGATGGAGTTGTGAGAGCTGGTAGAAGCACTATAGATGAATCAAGTTTCACTGGTGAACCACTGCCTGTAACAAAAGTAACTGGGAGTGAGGTTGCAGCTGGAAGTATAAATCTTAATGGAACTCTTACAGTGGAAGTGCGGAGACCAGGTGGCGAGACTGTTATGGGAGACATTGTTCGTCTAGTTGAAGAGGCACAAAGTAGGGAAGCTCCTGTACAGCGGTTGGCTGACAAGGTGGCTGGACACTTCACTTACGGAGTGATGGCAGCCTCTGCTGCTACATTCACATTCTGGAGTCTGTATGGCAAACACATTTTACCTTCTGCTCTATATCAAGGAAGCCCGGTGTCATTGGCTTTGCAGCTCGCCTGCAGTGTTCTGGTTGTCGCTTGTCCATGTGCACTTGGGTTAGCCACGCCCACTGCAGTGCTGGTTGGAACTTCTTTGGGGGCTAAACAAGGATTACTTTTGCGAGGTGGAAACATTCTAGAGAAGTTTGCCATGGTAAACACTGTTGTGTTTGACAAAACAGGGACCCTCACAGTTGGTAGACCTGTTGTAACAAACATTGTCACTCCTACATGCATAAAAAAAGCAATTTCAAGCCAAACTGAAGAAAATGTTTTGTCTGATGTTGAAGTTCTAAGGTTAGCGGCTGGGGTAGAATCAAATTCAGTACATCCAGTTGGGAAAGCAATTGTGGATGCTGCTCAGGCATTTAATTGTCATAATGCTAAGGTAACAGATGGAACATTCCTGGAAGAGCCTGGATCTGGTGCTGTGGCAACCATTGATAACAAAAAGGTTTCTGTCGGAACATTGGAATGGATTACGAGGAATGGAGTTATTAACAGTATACATCAAGAAGTGGAGAAGTATAATAACCAATCCTTTGTCTACGTTGGGGTTGATGATTCTTTAGCTGGCCTAATTTATTTTGAAGATGAGATAAGGGAAGATGCAAGAGATGTTGTTGACACACTGTCTAAGCAAAATATAGGTGTATACATGCTATCCGGAGACAAGAAGAATGTGGCTGAGCATGTTGCTTCTCTTGTCGGAATTCCCAAAGAGAAGGTGCTATCTGGAGTGAAACCAGATGAGAAAAAGAAGTTCATAAATGAACTTCAGAAAGATAAGAACATTGTAGCTATGGTTGGTGATGGAATTAATGATGCAGCAGCACTGGCTTCTTCTCATATTGGTATTGCATTAGGTGGAGGTGTTGGGGCTGCTAGTGAGGTGTCTTCTATCGTATTAATGCGCAACCAGCTCTCACAGCTAGTTGATGCCTTGGAGCTTAGCAGACTGACCATGAATACTGTAAAACAAAATCTTTGGTGGGCTTTCATTTACAACATTGTAGGAATTCCAATTGCAGCTGGAGTGTTATTTCCCATAAATGGGACGGTGCTGACTCCATCAATTGCAGGGGCTCTCATGGGGCTGAGTTCCGTTGGCGTAATGACTAACTCGTTACTTTTGAGATTCAAATTTTCCTCAAAGCAGAAACAAATACATAGCAAATTGCCAAAGATCAAAATCCATGGGGGTTCTGATCTGGCGCAACAAAACCAGAAAACAAACCACCCTTATTAG 2820 0.4344 MDSAFSVTTTAHMAFFRALHRHFAVAPQRAFLRRKLKCVVASYSNCSRTPCSFASAPSPSSLRSYGGLLLRTRCSLRCISSSAASFAGGGSGGGGIGDGGGGGGSGGESGDGNIKLVGDTAQELSSLSPDVIILDVSGMVCGGCAATVKRILESRPQVSSVSVNLTTETAIVWPVSEAKNAPNWQKQLGEALAEHLTSCGYNSSLRDSARDSFLQIFERKMEERHRQLRQCGRELAVSWALCAVCLVGHFSHFFAPKAPWIHAFHSIGFHLSLSLFTLLGPGRQLILDGLKSLLKRTPNMNTLVGLGALSSFTVSSLATLLPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMTGLLSLLPPKARLLVNNGETEVGLVVEVPSDSISVGDQIIVLPGDRVPADGVVRAGRSTIDESSFTGEPLPVTKVTGSEVAAGSINLNGTLTVEVRRPGGETVMGDIVRLVEEAQSREAPVQRLADKVAGHFTYGVMAASAATFTFWSLYGKHILPSALYQGSPVSLALQLACSVLVVACPCALGLATPTAVLVGTSLGAKQGLLLRGGNILEKFAMVNTVVFDKTGTLTVGRPVVTNIVTPTCIKKAISSQTEENVLSDVEVLRLAAGVESNSVHPVGKAIVDAAQAFNCHNAKVTDGTFLEEPGSGAVATIDNKKVSVGTLEWITRNGVINSIHQEVEKYNNQSFVYVGVDDSLAGLIYFEDEIREDARDVVDTLSKQNIGVYMLSGDKKNVAEHVASLVGIPKEKVLSGVKPDEKKKFINELQKDKNIVAMVGDGINDAAALASSHIGIALGGGVGAASEVSSIVLMRNQLSQLVDALELSRLTMNTVKQNLWWAFIYNIVGIPIAAGVLFPINGTVLTPSIAGALMGLSSVGVMTNSLLLRFKFSSKQKQIHSKLPKIKIHGGSDLAQQNQKTNHPY 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01468 939 ProSiteProfiles Heavy-metal-associated domain profile. 131 205 IPR006121 GO:0046872
Cca09g01468 939 Pfam Heavy-metal-associated domain 134 201 IPR006121 GO:0046872
Cca09g01468 939 Gene3D - 571 843 IPR023214 -
Cca09g01468 939 PRINTS Copper-transporting ATPase signature 285 304 - -
Cca09g01468 939 PRINTS Copper-transporting ATPase signature 333 352 - -
Cca09g01468 939 PRINTS Copper-transporting ATPase signature 563 578 - -
Cca09g01468 939 PRINTS Copper-transporting ATPase signature 770 787 - -
Cca09g01468 939 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 623 872 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g01468 939 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 337 601 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g01468 939 PRINTS P-type cation-transporting ATPase superfamily signature 419 433 - -
Cca09g01468 939 PRINTS P-type cation-transporting ATPase superfamily signature 580 594 - -
Cca09g01468 939 PRINTS P-type cation-transporting ATPase superfamily signature 716 727 - -
Cca09g01468 939 PRINTS P-type cation-transporting ATPase superfamily signature 738 748 - -
Cca09g01468 939 PRINTS P-type cation-transporting ATPase superfamily signature 793 812 - -
Cca09g01468 939 PRINTS P-type cation-transporting ATPase superfamily signature 816 828 - -
Cca09g01468 939 SFLD Haloacid Dehalogenase 563 843 - -
Cca09g01468 939 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 300 902 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cca09g01468 939 Pfam E1-E2 ATPase 364 560 - -
Cca09g01468 939 CDD P-type_ATPase_Cu-like 233 904 - -
Cca09g01468 939 TIGRFAM ATPase-IB1_Cu: copper-translocating P-type ATPase 282 903 - -
Cca09g01468 939 CDD HMA 134 201 IPR006121 GO:0046872
Cca09g01468 939 PANTHER ATP7, ISOFORM B 81 904 - -
Cca09g01468 939 SUPERFAMILY Calcium ATPase, transmembrane domain M 331 874 IPR023298 -
Cca09g01468 939 Gene3D - 591 724 IPR023299 GO:0000166
Cca09g01468 939 ProSitePatterns Heavy-metal-associated domain. 136 165 IPR017969 GO:0046872
Cca09g01468 939 Pfam haloacid dehalogenase-like hydrolase 576 805 - -
Cca09g01468 939 SUPERFAMILY HAD-like 578 900 IPR036412 -
Cca09g01468 939 SUPERFAMILY HMA, heavy metal-associated domain 132 203 IPR036163 GO:0046872
Cca09g01468 939 SFLD p-type atpase 563 843 IPR044492 -
Cca09g01468 939 SUPERFAMILY Calcium ATPase, transduction domain A 381 469 IPR008250 -
Cca09g01468 939 Gene3D - 350 473 - -
Cca09g01468 939 ProSitePatterns E1-E2 ATPases phosphorylation site. 582 588 IPR018303 -
Cca09g01468 939 Gene3D - 131 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01468 Cca-Chr9 37983089 38005671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01468 291 923 Primary Pumps ATPases AT1G63440 39.077 1.56e-123 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01468 K17686 - gmx:100796210 1566.98