Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01464 ATGGCGGAGCGTGCTTCTTACGGATTGGGACCTCGATTAGATATTCAGCAATTACAGCTTGAAGCTCAGCATAGGTGGTTGCGCCCTGCAGAAATATGTGAAATTCTTCGCAATTATCAGATGTTTCAAATCACGCCAGAACCACCTAACAAGCCACCGAGTGGTTCCCTTTTTCTTTTTGATCGGAAGGTTTTAAGGTACTTTAGGAAGGATGGACATAATTGGAGAAAGAAAAAAGATGGAAAGACTGTGAGGGAAGCTCATGAGAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACCGGACATGATGCATATAGTATTTGTTCACTACTTGGATGTCAAGGTTAACAAAACCAATATTGGTGGAAATACATATACTAATAATGAGGCTTCATCAGATTCCCAGAAGGACAGTTCTTTGTCATCTGGCTTTCCCAGAAGTTATGGTAGTGTGCCTTCAGGAAGCACAGATTCCATGAGCCCAACTAGCACTTTGACATCATTATGTGAAGATGCTGATTCAGAGGATATTCATCAAGCGAGTTCAGGATTACACACTTATCGAGAATCACAAAATTTGGGGAATGATTGTTTGAAGGACAAGATTGATGCTAGTTCAAATAGTTCATATGTTGTGCATCCATTTTCAGGTGATCATGGGCAGTTACCAATTTCTGGAACAGAATATGTCCCCCTTGTTCAAGGTGAGAGGTCTGGAGCAAGTGATACCACCTACATTGAGGGTCAGAGTGTGCATGGCATTGCATCCTGGGACTATGCCATGGAACAGTCTACTGGAAAGCATACCAATCCTTCTCTTGTTTCATCTACATCCATTCCATCAAGTGCATTCGGAAATGTCTCCACTGAAGAGGAAAGGAACTCTCAGCCTGTCCAATCAAATTGGCAGATTACTTTTGAAGACAATACAGGAGAATTGCCTAAGTGGGGCTTTACCCAATCATCGGGTTTGGAACTTGGATCTGATTATATTCCTAGTTTACTGGGTGATGTGACTAATAATGCAAGTCCAGAAACTGTTCCTGAGCTGTTCACTTTTAACGGCGAGGCTAAAGAACAGTCAGTGCATCAAAACTTCTCAAAGCAATATACACAAGCACAATCTCAACCTGCGCTGAAATCCAATTCTGAGTATGAAGTTCCTGGTGAAGCAAATATCAACTATGCCTTGACGATGAAGCGTGGATTATTGGATGGAGAGGAGAGCTTAAAGAAGGTTGATAGTTTCTCTAGGTGGATTACTAAAGAACTTGCAGGTGTGGATGATCTGCATATGCAGTCTTCCCCTGGCATTTCATGGAGCACAGATGAATGTGGGGATGTGATTGATGATACCTCATTGAACCTGTCCCTGTCTCAGGACCAGCTGTTTAGCATAAATGATTTTTCACCTAAATGGGCTTATGCTGAATCAGAAATTGAGGTATTGATTGTTGGAACATTTTTGAAGAGTCAACCTGAGGGGGCAACATGTCACTGGTCCTGTATGTTTGGGGAAGTGGAGGTTGCTGCTGAGGTTTTAGCTAGCGGAATTCTGTGCTGTCAAGCTCCACCTCATAAAGTTGGTCGAGTTCCCTTCTACGTTACATGTTCCAATAGGTTTGCTTGTAGTGAAGTTCGGGAATTTGAGTACAGAGAGGGATTTGATAGAAACATAGATTTTGCAGATTTTTTTAACAGTTCAACTGAAATGGTGCTTCATTTGCGACTGGTTGGGTTACTGTCTTTAAACTCGGTACACACTTCGTATCAAGTGTTTGATGGTGATATGGAGAAAAGAAACTTAATTTTCAAGCTTATTTCACTGAAGGAGGAAGAGGAATATTCAAGTAAGGAAGAGGCAACTGTTGAGATGGATATATCAAAACACAAACTGAAGGAACATATGTTTCACAAGCAGGTTAAAGAGAAGTTGTACTCATGGCTACTTCACAAAGTAACTGAAACTGGTAAAGGGCCTCTTGTACTAGGAGAGGAGGGGCAAGGCGTGTTTCATTTAGTTGCTGCTCTTGGTTATGATTGGGCTATAAAACCAATCATAACTGCTGGAGTCAATATCAACTTCCGTGATGTGAATGGATGGACAGCTCTACACTGGGCTGCATTCTGTGGCCGAGAGCGAACAGTTGCAATCCTTGTCTCCATGGGTGCAGCTGCTGGAGCATTGACAGATCCATGTCCAGAATTTCCTTCGGGTAGAACACCTGCAGATCTTGCTTCTGGCAATGGCCACAAAGGAATTTCTGGTTTTCTTGCAGAGTCATCATTAACTAGTCACCTCGAATCACTCACAATGGATGAAAATAAAGATGGTAGGACAGAAACTTCAGGAATGAAAGCAGTGCTAACAGTTTCAGAGAGAAGTTCGACACCTGTGATTCATAGTGATATACCACCTGTGATTTATGGTGATATACCAGATGCTATCTGCCTTAAGGATTCTCTTGATGCTGTTCGTAATGCTACACAAGCTGCTGATCGTATACACCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAGTTGGCTGCTCAGTATGAAGATGATGAATTTGGATTATCAAATCAACAAGCTCTTTCCCTCCTAGCTTCTAAGGCACGCAAATCTGGACAAGGAGAGGGTTTAGTCAATGCTGCTGCAATACAAATACAGAAAAAGTTCCGTGGTTGGAAGAAGAGAAAAGAATTCCTGATCATTCGTGAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTGAGAAAGCAGTATAAATCAATCATTTGGTCCGTGGGAATACTGGAAAAGGTCATATTGCGGTGGAGGCGCAAGGGTGCTGGCTTACGTGGATTTCGACCAGAAGTCCTGAACAAGGTCCCTGACCAACAACCAAGCGAATCTGTGAAAGAGGATGATTATGATTTTCTTAAGGAAGGAAGGAAACAGAGTGAAGCAAGGTTCCAAAAGGCCCTTTCACGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAGTACCGGCGGGTGCTGAATGTAGTGGAGGATTTCCGTCAAACCAAGGGAAGTAATTTGAATTCGATGAATTCGGAAGAGACAGTTGATGGTGTGGAGGATTTGATTGATATTGACATGCTTTTAGATGATGAGAATTTCTTACCTATAGCATTCGATTGA 3249 0.4241 MAERASYGLGPRLDIQQLQLEAQHRWLRPAEICEILRNYQMFQITPEPPNKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLDVKVNKTNIGGNTYTNNEASSDSQKDSSLSSGFPRSYGSVPSGSTDSMSPTSTLTSLCEDADSEDIHQASSGLHTYRESQNLGNDCLKDKIDASSNSSYVVHPFSGDHGQLPISGTEYVPLVQGERSGASDTTYIEGQSVHGIASWDYAMEQSTGKHTNPSLVSSTSIPSSAFGNVSTEEERNSQPVQSNWQITFEDNTGELPKWGFTQSSGLELGSDYIPSLLGDVTNNASPETVPELFTFNGEAKEQSVHQNFSKQYTQAQSQPALKSNSEYEVPGEANINYALTMKRGLLDGEESLKKVDSFSRWITKELAGVDDLHMQSSPGISWSTDECGDVIDDTSLNLSLSQDQLFSINDFSPKWAYAESEIEVLIVGTFLKSQPEGATCHWSCMFGEVEVAAEVLASGILCCQAPPHKVGRVPFYVTCSNRFACSEVREFEYREGFDRNIDFADFFNSSTEMVLHLRLVGLLSLNSVHTSYQVFDGDMEKRNLIFKLISLKEEEEYSSKEEATVEMDISKHKLKEHMFHKQVKEKLYSWLLHKVTETGKGPLVLGEEGQGVFHLVAALGYDWAIKPIITAGVNINFRDVNGWTALHWAAFCGRERTVAILVSMGAAAGALTDPCPEFPSGRTPADLASGNGHKGISGFLAESSLTSHLESLTMDENKDGRTETSGMKAVLTVSERSSTPVIHSDIPPVIYGDIPDAICLKDSLDAVRNATQAADRIHQVFRMQSFQRKQLAAQYEDDEFGLSNQQALSLLASKARKSGQGEGLVNAAAIQIQKKFRGWKKRKEFLIIRERIVKIQAHVRGHQVRKQYKSIIWSVGILEKVILRWRRKGAGLRGFRPEVLNKVPDQQPSESVKEDDYDFLKEGRKQSEARFQKALSRVKSMVQYPEARAQYRRVLNVVEDFRQTKGSNLNSMNSEETVDGVEDLIDIDMLLDDENFLPIAFD 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01464 1082 ProSiteProfiles IQ motif profile. 928 952 IPR000048 GO:0005515
Cca09g01464 1082 Gene3D Immunoglobulins 481 576 IPR013783 -
Cca09g01464 1082 ProSiteProfiles Ankyrin repeat profile. 721 753 IPR002110 GO:0005515
Cca09g01464 1082 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Cca09g01464 1082 MobiDBLite consensus disorder prediction 146 188 - -
Cca09g01464 1082 Pfam IPT/TIG domain 488 573 IPR002909 -
Cca09g01464 1082 Gene3D - 905 952 - -
Cca09g01464 1082 ProSiteProfiles Ankyrin repeat region circular profile. 721 746 - -
Cca09g01464 1082 Gene3D - 650 792 IPR036770 -
Cca09g01464 1082 Pfam IQ calmodulin-binding motif 930 949 IPR000048 GO:0005515
Cca09g01464 1082 Pfam IQ calmodulin-binding motif 907 925 IPR000048 GO:0005515
Cca09g01464 1082 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Cca09g01464 1082 SMART ANK_2a 760 789 IPR002110 GO:0005515
Cca09g01464 1082 SMART ANK_2a 721 750 IPR002110 GO:0005515
Cca09g01464 1082 ProSiteProfiles IQ motif profile. 906 934 IPR000048 GO:0005515
Cca09g01464 1082 SUPERFAMILY E set domains 488 574 IPR014756 -
Cca09g01464 1082 SUPERFAMILY Ankyrin repeat 672 782 IPR036770 -
Cca09g01464 1082 MobiDBLite consensus disorder prediction 287 320 - -
Cca09g01464 1082 SMART CG_1_2 18 136 IPR005559 GO:0003677
Cca09g01464 1082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 904 955 IPR027417 -
Cca09g01464 1082 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1082 - -
Cca09g01464 1082 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1082 - -
Cca09g01464 1082 SMART iq_5 927 949 IPR000048 GO:0005515
Cca09g01464 1082 SMART iq_5 904 926 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01464 Cca-Chr9 37947192 37958329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01464 1 1063 CAMTA Transcription Factor Family AT5G64220 52.500 0.0 1080
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Cca09g01464 CG-1 1e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01464 K21596 - gmx:100795682 1853.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01464 09 37947192 37958329 Cca08g02679 08 61209325 61222521 PCT