Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01455 ATGGCTACCCTTGTTTCAAATAATTCAGCTTCTCCTTCTACACTGGAGATAGAAGCATGCAGTGATATTCCAATAGGGAGGGAAAGAAGAGGAGAGGGGAACTCAGGTTGGAGTAATGAGAGAGAAGAGATGGGAATATGTTTGACATGGAAGGATGTGTGGGTGACTGCTTCTGTGGGAAAGAATGGAAGCAAATCAATTCTTGAGGGTCTCACTGGTTATGCCAAACCAGGCCAACTCTTGGCCATCATGGGTCCTTCTGGCTGTGGCAAATCTACACTTCTTGATGCTTTAGCAGGGAGATTAAGTTCCAACACAAGGCAAACAGGGGAGATCCTGATCAATGGGAAGAAACAAGCACTGGCTTACGGAACCTCAGCATATGTAACACAAGATGAAACGTTACTGGCAACCTTAACTGTTGGAGAAACAGTGCACTATTCAGCTCAACTCCAATTGCCAGACACCATGTCCAAGAAAGAGAAGAAAGAGAGAGCAGACTTCACAATAAGAGAAATGGGTCTTCAAGATGCCATTAACACAAGAATTGGAGGGTGGGGTGTTAAAGGAATTAGTGGGGGCCAGAAGAGGAGAGTGAGCATATGCATTGAGATTCTAACACGACCAGGACTTCTGTTCCTTGATGAACCAACTAGTGGACTTGATAGTGCAGCTTCCTATTATGTTATGAGTGGCATTGCTAGCCTTGACAAAAAAGATGACATGCACAGGACTGTTATTGCCTCAATCCACCAACCTAGTACTGAAGTTTTTCAACTTTTCCACAACCTTTGTCTTTTGTCTTCAGGTAGAACTGTTTACTTTGGACCTGCTTCTGCTGCAACTGAGTTTTTCGCTTCAAATGGTTTTCCTTGTCCTACTCTCATGAATCCTTCTGATCATTTACTGAAAACCATAAACAAGGATTTTGATCAGGTTAATGAGTTGAATTCAGGAGGGGCTGAAACAATACCCACTGAAGAAGTAATTCGGATCCTTGTAAATTCATACAAGTCATCCGAAATGAACCAAGAAATTCAGAAAGAAGTGGAAGTACTATCTGAAAAGGACACCACTGCAACAAATACGAAGAGAAAACATGCTGGCTTCCTTAATCAGTGTTTTCTTCTTACCAAAAGATCATCCATTAACATGTATCGTGATCTAGGCTATTACTGGTTACGCCTTGCCATATATGTTGCATTGGCTATAAGTTTAGCTACCACTTTCTATGATTTGGATAAAAATTATCAGTCAATTCAGGATAGAGGCTCATTTCTTATGTTTGTATCTTCATTCATGACTTTCATGACCATAGGTGGATTCCCCTCCTTTGTAGAGGACATGAAGGTGTTTGAACGTGAAAGACTAAATGGACATTATAGTGTCACTGCATTTGTAATTGGGAACACCTTGTCAGCTATCCCATACTTGATGTTGGTTTCAATCGTTCCTGGAGCTATAGCCTATTACCTCCCTGGTCTTCAGAAAGGCTTTGAGCACTTCGTATACTTCATTTGTGTTCTCTTTTCTTGTCTAATGTTAGTAGAGAGCCTAATGATGATAGTTGCCAGCATTGTCCCCAACTTTCTAATGGGGATCATAACCGGTGCTGGAATTCAAGGAATCATGATGCTAGGTGGTGGCTTCTTCAGGTTGCCAAAGGATCTTCCTGGTCCATTTTGGAGATATCCAATGTTTTATGTTGCCTTCCATAGATATGCCTACCAAGGAATGTTCAAAAACGAGTTTGAAGGACTAAGATTTACTACAAAAGATGGTGGCTCCTACATCACTGGTGAAAAGATTCTGAGAGATACATGGCAAGTAAATATGAGTTACTCGAAGTGGGTCGATCTTGGAATCCTACTAGGGATGATTATTCTGTATAGAGTTATCTTTTTGGTTAACATCAAAACTACTGAGAAGCTAAAGCCCATCATTGTATCGTTCATGTCATCATCAGGGGCTACCAAGCGAAAAATGCAAATCATGCAGAATCCCAATGCCACTCCTTTACAACAAGTTCAAGTTGTATAG 2040 0.4108 MATLVSNNSASPSTLEIEACSDIPIGRERRGEGNSGWSNEREEMGICLTWKDVWVTASVGKNGSKSILEGLTGYAKPGQLLAIMGPSGCGKSTLLDALAGRLSSNTRQTGEILINGKKQALAYGTSAYVTQDETLLATLTVGETVHYSAQLQLPDTMSKKEKKERADFTIREMGLQDAINTRIGGWGVKGISGGQKRRVSICIEILTRPGLLFLDEPTSGLDSAASYYVMSGIASLDKKDDMHRTVIASIHQPSTEVFQLFHNLCLLSSGRTVYFGPASAATEFFASNGFPCPTLMNPSDHLLKTINKDFDQVNELNSGGAETIPTEEVIRILVNSYKSSEMNQEIQKEVEVLSEKDTTATNTKRKHAGFLNQCFLLTKRSSINMYRDLGYYWLRLAIYVALAISLATTFYDLDKNYQSIQDRGSFLMFVSSFMTFMTIGGFPSFVEDMKVFERERLNGHYSVTAFVIGNTLSAIPYLMLVSIVPGAIAYYLPGLQKGFEHFVYFICVLFSCLMLVESLMMIVASIVPNFLMGIITGAGIQGIMMLGGGFFRLPKDLPGPFWRYPMFYVAFHRYAYQGMFKNEFEGLRFTTKDGGSYITGEKILRDTWQVNMSYSKWVDLGILLGMIILYRVIFLVNIKTTEKLKPIIVSFMSSSGATKRKMQIMQNPNATPLQQVQVV 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01455 679 Pfam ABC transporter 70 219 IPR003439 GO:0005524
Cca09g01455 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 285 IPR027417 -
Cca09g01455 679 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 39 673 - -
Cca09g01455 679 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 39 673 - -
Cca09g01455 679 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 48 294 IPR003439 GO:0005524
Cca09g01455 679 Pfam ABC-2 type transporter 373 584 IPR013525 GO:0016020|GO:0140359
Cca09g01455 679 ProSitePatterns ABC transporters family signature. 191 205 IPR017871 GO:0005524
Cca09g01455 679 Gene3D - 37 289 IPR027417 -
Cca09g01455 679 Pfam ABC-2 type transporter 251 363 IPR043926 GO:0140359
Cca09g01455 679 SMART AAA_5 77 266 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01455 Cca-Chr9 37833419 37840277 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01455 67 279 Calmodulin-binding Proteins AT2G36910 28.767 4.11e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01455 K05681 - gmx:100813462 1150.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01455 09 37833419 37840277 Cca09g01455 09 37833419 37840277 ECH