Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01454 ATGGCTTGCCCTCACGATAACTCTGTTTCATGTGGTCCTATAAGTGCTTGTGAAACCAAACCTAGGTCAAAATCAGAAGTCCTAGACATTGAAATGGAAAGAAAGATGAATAGAGGAGAATGTGAAGTGGGTATCTGCTTGACATGGAAGGATGTGTGGGTGAGTGCCTCCAATAGAAAGGATGGGAGGAAATCAATTCTTGAGGGTCTCACTGGTTATGCCAAGCCTGGACAACTCTTGGCCATAATGGGTCCCTCTGGCTGTGGCAAATCAACACTACTTGATGCTTTAGCAGGGAGATTAGATTCAAACACAAGACAAACTGGGGAGATTCTGATCAATGGTCACAAACAAGCACTATCTTACGGAACCTCGGCTTATGTCACACAAGACGACATATTGTTGACAACGTTAACGGTTAGAGAAGCAGTGCACTATTCAGCTCAACTCCAATTACCTGACACCATGTCCAAGAAAGAGAAGAAAGAGAGAGCAGACTTCACAATAAGAGAAATGGGTCTTCAAGATGCCATTAACACAAAAATTGGAGGGTGGGGTTGTAAAGGCATTAGTGGGGGTCAGAAGAGGCGAGTTAGCATTTGCATTGAGATCCTAACACGCCCTAAACTTCTTTTTCTTGATGAACCAACTAGTGGACTAGACAGTGCAGCTTCCTATTATGTCATGAAAAGAATCGCTGCCCTGGCTCAAAATGATCACACTCAGAGAACTGTTGTTGCTTCAATCCACCAACCTAGTAGTGAAGTTTTTCAACTCTTTAATAACCTTTGTCTTTTGTCTTCGGGTAAAACCGTTTACTTTGGACCTGCTTCAGCTGCAAGTGAGTTTTTTGCATCAAATGGTTTCCCATGTCCTGGTCTCATGAATCCTTCTGATCATTTACTGAAGACTATAAACAAGGATTTTGATCAGGACATTGAGATGGGTTTAGCAGAAACTAGAATACCCACAGAAGAAGTAATCCACATCCTTGTGAGCTCATACAAATCTTCAGAAAGGAAACAAGAAGTTCAAAATGAAGTAGCTATACTATCTGAGAAGGACAAAAGTTCATTGGATTTGAAGAGAGGACATGCAGGTTTCCTTAATCAATGCTTAGCTCTCACCGAAAGATCGTTCTTGAACATGTATCGTGATCTAGGCTATTATTGGTTACGCCTTGTCATATATATTGCATTGGCCATAACTTTAGGCACTGTTTTCTATAATTTGGGCACAAGTTATGACTCAATTAAGGATCGAGGTTCGCTTGTTGCATTTATAAATGGTTTCATTACTTTCATGACCATTGGTGGATTCCCTTCCTTTGTGGAAGTCATGAAGGTATTTCAACGAGAAAGACAAAATGGTCATTATGGTGTTACTGCATTTGTCATTGGTAACACCTTATCATCTATCCCATACTTGCTATTGGTGACAGTCATTCCCGGGGCTATATCTTATTACCTTCCTGGCCTTCAGAGTGGATGCGAGCACTTTCTGTATTTCATTTGTGTTTTATTTTCTAGTCTCATGTTAGTGGAGAGCCTCATGATGATAGTTGCAAGCGTGGTTCCAAACTTTCTAATGGGCATCATAACCGGTGCTGGAATTCAAGGAGTCATGCTTTTAGTTAACGGGTTCTTTAGATTGCCAAATGATATTCCTAAGCCAGTTTGGAAGTACCCGTTACACTTCGTTGCTTTTCACACGTTTTCCGACCAAGGAATGTTCAAGAACGAGTACCAAGGACTGAGATTTGCTACAAATGGAGTTGGAGAAGGAGGATCAAAGGGTTACGTAAGTGGTGAAGAGGTTTTGAGAAATATATGGCAAGTTGACATGAGTTACTCCAAGTGGGTTGATCTTGCAGTCTTGGCGGGGATGATTGTTGTGTATCGAGTTTTGTTTTTGGTTATCATCAAGATTAAAGAGAAGGTGAAGCCCCGTGGTGTATCGCTATCGTGCATGTCAGCGTCTCCCAAGCGAAAGATAAAGGTCATGGAAAACCCTAACGCCACTCCAATGCATTCACAAGTTCTGTAA 2046 0.415 MACPHDNSVSCGPISACETKPRSKSEVLDIEMERKMNRGECEVGICLTWKDVWVSASNRKDGRKSILEGLTGYAKPGQLLAIMGPSGCGKSTLLDALAGRLDSNTRQTGEILINGHKQALSYGTSAYVTQDDILLTTLTVREAVHYSAQLQLPDTMSKKEKKERADFTIREMGLQDAINTKIGGWGCKGISGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYYVMKRIAALAQNDHTQRTVVASIHQPSSEVFQLFNNLCLLSSGKTVYFGPASAASEFFASNGFPCPGLMNPSDHLLKTINKDFDQDIEMGLAETRIPTEEVIHILVSSYKSSERKQEVQNEVAILSEKDKSSLDLKRGHAGFLNQCLALTERSFLNMYRDLGYYWLRLVIYIALAITLGTVFYNLGTSYDSIKDRGSLVAFINGFITFMTIGGFPSFVEVMKVFQRERQNGHYGVTAFVIGNTLSSIPYLLLVTVIPGAISYYLPGLQSGCEHFLYFICVLFSSLMLVESLMMIVASVVPNFLMGIITGAGIQGVMLLVNGFFRLPNDIPKPVWKYPLHFVAFHTFSDQGMFKNEYQGLRFATNGVGEGGSKGYVSGEEVLRNIWQVDMSYSKWVDLAVLAGMIVVYRVLFLVIIKIKEKVKPRGVSLSCMSASPKRKIKVMENPNATPMHSQVL 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01454 681 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 47 293 IPR003439 GO:0005524
Cca09g01454 681 CDD ABCG_EPDR 44 275 - -
Cca09g01454 681 Pfam ABC-2 type transporter 371 565 IPR013525 GO:0016020|GO:0140359
Cca09g01454 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 282 IPR027417 -
Cca09g01454 681 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 1 677 - -
Cca09g01454 681 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 1 677 - -
Cca09g01454 681 Pfam ABC transporter 69 218 IPR003439 GO:0005524
Cca09g01454 681 Gene3D - 47 296 IPR027417 -
Cca09g01454 681 SMART AAA_5 76 319 IPR003593 -
Cca09g01454 681 Pfam ABC-2 type transporter 250 355 IPR043926 GO:0140359
Cca09g01454 681 ProSitePatterns ABC transporters family signature. 190 204 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01454 Cca-Chr9 37809922 37815975 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01454 50 232 Calmodulin-binding Proteins AT2G36910 30.412 4.36e-10 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01454 09 37809922 37815975 Cca09g01454 09 37809922 37815975 ECH