Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01453 ATGGGAAACACAAACACAGCAGAAACTCTTGTTCCAAATCTCGTAGCAGACAAAGGTGATGATATTAAGTTAACAGAAATTATTGGAAGTAATCAGGGAGAGAAGGACATAACAGTGACATGGGAGAATTTGTGGGTCACTGTTCCAAGGGGAAAGAAAAAGAAGCCAATTCTGCAGGGTCTTACAGGTTATGCCAGGCCAGGAAAGATTCTAGCCATAATGGGTCCTTCAGGATGTGGAAAATCTACACTTCTTGATGCTTTAGCAGGAAGATTGAGCTCAAACATGAAGCATGCAGGAAAGATTCTAATCAATGGCCAGAAACAAGCACTGGCCTATGGGACATCAGGCTATGTAACACAAGATGATGCTATGCTGTCAACTTTAACCACTAGAGAAACCTTATACTACTCAGCTCAGCTCCAATTTCCAGATTCCATGTCCATAGCAGAGAAGAAGGAACGAGCAGATATTACACTGAGAGAAATGGGTCTGCAAGATGCCATCAACACAAAAGTTGGAGGGTGGCATTCTAAGGGCCTCAGTGGGGGACAAAAGAGGAGGCTCAGCATTTGCATTGAGATTCTCACGCGACCAAAACTTCTGTTCCTTGATGAACCAACTAGTGGCCTTGATAGTGCAGCATCCTATTATGTTATGAGTAGAATTGCAAGACTAAATCTAAGGGATGGCATTAGAAGGACTATTGTTGCATCCATCCATCAGCCTAGCAGTGAAGTTTTTGAACTTTTCCATGACCTATGCCTTCTGTCTTCTGGTGAAACAGTATATTTTGGTCCAGCCTCTGATGCAAATCAGTTTTTTGCTTCAAATGGTTTCCCTTGCCCAACTCTCTACAATCCTTCTGATCACTACTTAAGGATCATAAACAAAGATTTTGAACAGGATGCTGAAGAAGGTTTTGTTAAGGGAGTAACCACAGAAGAAGCAATTGATACCCTTGTAAAGTCTTACAGATCGTCTCAAATAAGAAAACAAGTTATAAATGAAGTGGAAAAAATAGCTGAAAGTGATTCTGGTGCAATAAGGAAGCAGAGGATTCATGCTGCAGTTCACACTCAATGCCTTGTTCTTATAAGAAGATCTTCCTTGCAATTGTTTCGTGACACGGGAAATTACTGGTTACGATTAGTTGTCTTTATTATAATAGCTATAAGCATTGGCTCTATCTACTATAACATAGGCACCAGTCATGGATCTATTGAGGCGAGAGGTTCGCTGCTCATATTTTTCATTTCAGTTCTGAGTTTCATGACCCTTGTTGCTGGATTCTCTCCACTTTTGGAAGAAATGAAGGTATTTGAAAGAGAGAGATTGAATGGACACTATGGTATCACAGCATTTCTCGCTGGCAACTTATTCTCTGCTGTTCCTTACATTCTTCTGATCTCTCTGATTCCGGGAGGAATAGCTTATTACCTTTGTGGTATGCACGAAGGACTAGATCGCTTCATGTACTTCACTGCTTTGCTATTTGCCATAGTGATGTGGGTTGAGAGCCTTATGTTGGTTATTGGAAGCATCTCTCCAAATTATGTAATAGGCATGTTCCTAGCTGGTGGAGTTGAAGGACTCATGATTTTAACAGGTGGATTCTATCGAAGGCCAAATGACCTTCCCAAACCATTATGGAAATACCCTTTGTACTATGTTTCATTCCTCAAGTATGCCTTCCAAGGATCATTCAAGAACGATTTTGATGGCTTAACATTTTCTGTAGACCAAGATGGAGGCATTAATAGAACCATCAGTGGTAGAAATGTTTTAATTGACACATGGCACGTGGAAATGGGTCACTCTAAGTGGGTTGATCTTGCTATCATGTTTGGAATGATTGTGTTGTATCGAGTTATGTTCTTGGCCATCACTAAGAGCAAGGAGAAGCTGAAGCCTTTTGTTGCATCCATTAGTTCTCTTCGAGGATAA 1947 0.4078 MGNTNTAETLVPNLVADKGDDIKLTEIIGSNQGEKDITVTWENLWVTVPRGKKKKPILQGLTGYARPGKILAIMGPSGCGKSTLLDALAGRLSSNMKHAGKILINGQKQALAYGTSGYVTQDDAMLSTLTTRETLYYSAQLQFPDSMSIAEKKERADITLREMGLQDAINTKVGGWHSKGLSGGQKRRLSICIEILTRPKLLFLDEPTSGLDSAASYYVMSRIARLNLRDGIRRTIVASIHQPSSEVFELFHDLCLLSSGETVYFGPASDANQFFASNGFPCPTLYNPSDHYLRIINKDFEQDAEEGFVKGVTTEEAIDTLVKSYRSSQIRKQVINEVEKIAESDSGAIRKQRIHAAVHTQCLVLIRRSSLQLFRDTGNYWLRLVVFIIIAISIGSIYYNIGTSHGSIEARGSLLIFFISVLSFMTLVAGFSPLLEEMKVFERERLNGHYGITAFLAGNLFSAVPYILLISLIPGGIAYYLCGMHEGLDRFMYFTALLFAIVMWVESLMLVIGSISPNYVIGMFLAGGVEGLMILTGGFYRRPNDLPKPLWKYPLYYVSFLKYAFQGSFKNDFDGLTFSVDQDGGINRTISGRNVLIDTWHVEMGHSKWVDLAIMFGMIVLYRVMFLAITKSKEKLKPFVASISSLRG 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01453 648 Pfam ABC-2 type transporter 360 571 IPR013525 GO:0016020|GO:0140359
Cca09g01453 648 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 13 639 - -
Cca09g01453 648 CDD ABCG_EPDR 37 266 - -
Cca09g01453 648 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 13 639 - -
Cca09g01453 648 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 39 284 IPR003439 GO:0005524
Cca09g01453 648 ProSitePatterns ABC transporters family signature. 181 195 IPR017871 GO:0005524
Cca09g01453 648 Gene3D - 28 279 IPR027417 -
Cca09g01453 648 Pfam ABC-2 type transporter 241 301 IPR043926 GO:0140359
Cca09g01453 648 Pfam ABC transporter 59 209 IPR003439 GO:0005524
Cca09g01453 648 SMART AAA_5 67 260 IPR003593 -
Cca09g01453 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 275 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01453 Cca-Chr9 37800516 37806103 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01453 68 226 Calmodulin-binding Proteins AT2G36910 32.738 1.67e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01453 K05681 - gmx:100790102 1099.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01453 09 37800516 37806103 Cca09g01453 09 37800516 37806103 ECH