Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01446 ATGGGGCTTCACTACAGAAAGTTGTTATCATTTGTAAAGTGTGGAATAACATGTACCCCTACTGAGCAAGAGAAATCATCATGTCTCTGTGCTCCACCTTTATCCCCTCCATATGATGATGAACTGCCCCAACCTCCACCTATACACACCAAAGCCAAAACCCCCACCTACTTGATCATCATCTTTTCCTTTGTAGCCACCGCTTTCATCGTCCTTTGCTGCTACGCCATCTACGTTAAGTTCTTTAGATCAAGGAGGacaagtacaacaacctcatcacaaccacaaccacaacaggaagaagaacaaGACTTGTTTGACGAAGAACAGCAACACGTTGACCACCCCATATGGTACATCCGCACCACCGGTCTCCACCAATCACTAATCTCTGCCATCACCGTTTGCAAGTACAAGAAAGACGAAGGCTTGATCGAAGGCACCGAGTGTGCCGTTTGCTTGAGCGAGTTTCAAGAGGATGAAAGTCTCAGGCTTTTGCCAAAGTGCAACCACGCTTTTCACTTGCCTTGCATTGACACGTGGCTCACTTCGCACACCAATTGCCCCATGTGTCGTGCACCCATTGTTACTGACCCCACAAGGGTTCCCTCCATGGACCCTAGTGCCTTTGCTTCCACTTCTTTTGTGGAGGAGATAGAGGTTTCGGAAAGTACTGAAAATAGTGCTGATTTGTTGAGGAATGAGGAACAAGAGGGAGTGGAAGAAGCTCAAGTGCTTGAAACTAGTGAGGTTGTAACTGTGCAGCCAAGAAGATCGGTGTCTCTGGATTCTTCTTCTGCTGCTAAGATCAACCTTGCTCTTGCAACTGTTACTTCAGGGGAATCTCATGGGAATAACTCAAAGAGGGTTGCAAAAGGTGGTTGTGGTTCTTCTTCCACTAGTTCGGTGAAGAGGTCACGATCCTTCAATGCTAAACACTTGGTATCATGGTAA 954 0.4434 MGLHYRKLLSFVKCGITCTPTEQEKSSCLCAPPLSPPYDDELPQPPPIHTKAKTPTYLIIIFSFVATAFIVLCCYAIYVKFFRSRRTSTTTSSQPQPQQEEEQDLFDEEQQHVDHPIWYIRTTGLHQSLISAITVCKYKKDEGLIEGTECAVCLSEFQEDESLRLLPKCNHAFHLPCIDTWLTSHTNCPMCRAPIVTDPTRVPSMDPSAFASTSFVEEIEVSESTENSADLLRNEEQEGVEEAQVLETSEVVTVQPRRSVSLDSSSAAKINLALATVTSGESHGNNSKRVAKGGCGSSSTSSVKRSRSFNAKHLVSW 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01446 317 Pfam Ring finger domain 149 192 IPR001841 -
Cca09g01446 317 SMART ring_2 150 191 IPR001841 -
Cca09g01446 317 CDD mRING-H2-C3H2C2D_ZSWM2 149 192 - -
Cca09g01446 317 PANTHER RING-H2 FINGER PROTEIN ATL54 14 310 - -
Cca09g01446 317 MobiDBLite consensus disorder prediction 278 304 - -
Cca09g01446 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 199 IPR013083 -
Cca09g01446 317 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 14 310 IPR044675 -
Cca09g01446 317 SUPERFAMILY RING/U-box 140 199 - -
Cca09g01446 317 MobiDBLite consensus disorder prediction 88 107 - -
Cca09g01446 317 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01446 Cca-Chr9 37755766 37756807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01446 47 223 C3H Transcription Factor Family AT1G72220 46.196 1.03e-47 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01446 - - gmx:100801551 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01446 09 37755766 37756807 Cca09g01446 09 37755766 37756807 ECH