Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01434 ATGACTAGAAAGAGGATACAGATCAAGAAAATAGACAACATAAGTTCGAggcaggttactttctccaagcgaaggaaagggcttttcaagaaagctcaggagctatcaaccctttgtgatgcagacatagctctcatagtgttttctgcaactagcaagctctttgagtATGCAAGTTCTAGTATGCAACAAGTAATTGAAAGGCGCGATCGCCATTCGGCAATGCATAGATTGGATCGCCCCTCTATTGAGATGCAGATTGAGACTGACTCCAACGACATCCTGCGCAAGAAAGTAGAAGATAAAAGTCGTGAACTGAAGCAGTTGTATGGGGAAGATCTGCAAGGGTTGACATTACAAGAGCTGCAGAAACTAGAGGAGCTACTTAAAAGAGGTTTGACCAATGTTTCAAAACTAAAGGATGAAAAAGTTATGGAAGAGATCTTCACCCTTAAGAGAAAGGGAGTGGAACTGATGGAGGAAAACCAAAGACTGAAACAGGTACCAAGCATTTTCCAAGTACATAGGCAATCATCGGAATCCATTATTAGCAATTCATCTAATTTTCCTGAAGATGGTGGTAGTGATACATCTCTCAAGTTGGGGTTACCTTAA 615 0.3252 MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFEYASSSMQQVIERRDRHSAMHRLDRPSIEMQIETDSNDILRKKVEDKSRELKQLYGEDLQGLTLQELQKLEELLKRGLTNVSKLKDEKVMEEIFTLKRKGVELMEENQRLKQVPSIFQVHRQSSESIISNSSNFPEDGGSDTSLKLGLP 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01434 204 Coils Coil 122 142 - -
Cca09g01434 204 PANTHER - 1 188 - -
Cca09g01434 204 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Cca09g01434 204 Coils Coil 92 112 - -
Cca09g01434 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 - -
Cca09g01434 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca09g01434 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca09g01434 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca09g01434 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca09g01434 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca09g01434 204 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Cca09g01434 204 Pfam K-box region 93 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca09g01434 204 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Cca09g01434 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca09g01434 204 ProSiteProfiles K-box domain profile. 85 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca09g01434 204 MobiDBLite consensus disorder prediction 182 204 - -
Cca09g01434 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01434 Cca-Chr9 37575937 37591401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01434 1 204 MADS-box Gene Family AT4G24540 49.770 9.99e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca09g01434 K-box 2.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01434 - - gmx:100815814 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01434 09 37575937 37591401 Cca08g02644 08 60867311 60906911 PCT