Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01421 ATGGATACGGTGAACCATCACCGGGAAGACCCACCGCCGCTTCCCATGCACCTCGACACCTTCCATCACGCCAACGCTTCCGACGAAGGGGAACAACCTGCTCCACTCGCCATTGCTTCTTCTGCTCCGCACGCCCGCACCAGTGAACTCACCATTTCCTTCGAAGGCGAGGTCTATGTTTTCCCAGCTGTTACGCCCGATAAGGTCCAGGCTGTATTATTACTCTTGGGGGGGCAGGAGATGCAAAATAACGGCCCTGCTTCTGACATTTTGTTGCAGCAAAACTGTCAGGACATTAGGGGAATAAATGATCCCTCCCGAAACTCGAAGCTTTCACGAAGATTTGCATCACTTGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTCGAGAAAAAAATCCGGTATTCTTGCCGTAAAGAGGTTGCCCAGAGGATGCATCGAAAGAATGGACAGTTTGCGTCATTAAAGGAAGACTACAAATCTCCTACTGAAAACTGGGATTCAAGCAATGGTACTCCTTGCCCAGAATCTATTGAACGTAGATGCCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCAGCAGGTCCAAGATCTCTGTGCAATGCCTGTGGGCTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGGAAGGGTTGCTTTTGAACAAAATGAACTGGATACTTCAGCTGATATAAAGCCTTCAACAACAGAAGCAGAACATTCTTGTGCTAACCCGGACAAGGAGGGAAGTCCTGAGGAAACTAAGCCTGTACAAATGGATTCCAGACAGTCACCTGAGAAGACAAATGGGCAGGTTTTATCTATTTATTTGTTTGTTTGTGTAAGCTATGATGAGGAAATTTGTCTTGATTATGCAATTTACTATCGTTGA 924 0.4632 MDTVNHHREDPPPLPMHLDTFHHANASDEGEQPAPLAIASSAPHARTSELTISFEGEVYVFPAVTPDKVQAVLLLLGGQEMQNNGPASDILLQQNCQDIRGINDPSRNSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASLKEDYKSPTENWDSSNGTPCPESIERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGRVAFEQNELDTSADIKPSTTEAEHSCANPDKEGSPEETKPVQMDSRQSPEKTNGQVLSIYLFVCVSYDEEICLDYAIYYR 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01421 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 179 230 - -
Cca09g01421 307 ProSitePatterns GATA-type zinc finger domain. 183 210 IPR000679 GO:0006355|GO:0043565
Cca09g01421 307 ProSiteProfiles GATA-type zinc finger domain profile. 177 234 IPR000679 GO:0006355|GO:0043565
Cca09g01421 307 MobiDBLite consensus disorder prediction 1 20 - -
Cca09g01421 307 ProSiteProfiles Tify domain profile. 43 78 IPR010399 -
Cca09g01421 307 MobiDBLite consensus disorder prediction 237 277 - -
Cca09g01421 307 CDD ZnF_GATA 182 225 IPR000679 GO:0006355|GO:0043565
Cca09g01421 307 Pfam tify domain 46 77 IPR010399 -
Cca09g01421 307 ProSiteProfiles CCT domain profile. 114 156 IPR010402 GO:0005515
Cca09g01421 307 Gene3D - 177 235 IPR013088 GO:0006355|GO:0008270
Cca09g01421 307 Pfam GATA zinc finger 183 219 IPR000679 GO:0006355|GO:0043565
Cca09g01421 307 SMART GATA_3 177 230 IPR000679 GO:0006355|GO:0043565
Cca09g01421 307 Pfam CCT motif 114 155 IPR010402 GO:0005515
Cca09g01421 307 MobiDBLite consensus disorder prediction 252 266 - -
Cca09g01421 307 SMART tify_2 43 78 IPR010399 -
Cca09g01421 307 PANTHER GATA TRANSCRIPTION FACTOR 28 27 284 IPR045280 GO:0006355
Cca09g01421 307 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 27 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01421 Cca-Chr9 37477733 37481533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01421 49 226 Tify Gene Family AT1G51600 57.527 8.37e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca09g01421 CCT 5.3e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01421 - - gmx:102669848 476.478