Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01412 ATGCTACAACAGATGCCTTCTATCTGGTTTCTTAAACTAGCCCTAAAATGCTTTGATCATGTCGCATGGCCTCTTCTTGCGTTGGGGTATCCTCTATGTGCTTCCGTACAAGCAATCGAGACTGATTCCTATAAAGAAACTAGGGACTTAGTCTCATATTGGATACTTCTCTCCTTAATATACCTCTTTGAGTATGCATTTTCGAGGCTTCTTCTATGGTTCCAATTCTGGCCATACATTAAGCTAATGATCATCTTCTGGCTCATCATACCAGACTTCGGACAAGCCTCTAATGCCTATAACCTTATTCGCTCTTGCATCTCCTTAAATCCACATGCAGTCATATGTAGGTTAAATAACTGGAGGAAGTTTTTTGTCAAGAAAGATGACTTTTTACTGCATGCGGAAAGATATGTAAAAGAGAATGGAACTGAAGCCTTAGAGAAACTCATTGCCAGCAAGAACATAACTTATAAACTTGATGCTGAAGCAACAAATGCAATTAGAGCCACTGATAATAAAGAAATGCAACAGACAATTGAGAAAAAGCTCCAAACAGAGCACAAAGCCTTCAAAGATTTAGAGGTCATCGAGAAAAGAGAAAATCCTGCTAGCAAACAAGATATTCCTGTTGTGCCTAACCATGCGCCAAGTCAGAATGCTTCACCAGCCATGGTGGAAACTAAAGGAATTGTGGGGAAAGAGACAGCCGGTGTAGAGCTTCCTCAGAGTTCTACACATAAGGAAATGCAGAAGGAGTGGACTTGTGCTTTATGTCATGTAACAACTTCAAGCGAGAAAACTTTGAATGAACACATGCATGGGAGGAAACACAGGGCTACTTGTGAAGCTCTGAAAGTAAAGAATCAACCTGTTTCTCAGAAGCTGCGGAGTGATCAGTACAAAGAGGCATTGAAACAGAAGAACATTATCAATCAGAAAAATTCCAAGACCAAGGATGGAGAGAGTATAGTTAACAACATGTTGAAGGGAGGAAAAGAAGTCATGGATCAGAAGGTGCAAAATCCGCAAAAGAAACAATATGTACCTGCTGGGACGAATCATCCCAAATTCAGATGTGAAATCTGTAATGTCAAATGCCCTTGCGACATTACCTTGGCCTCTCACAAAAATGGGAAGAAGCATATGGAAAAAGTTAGAAGTTTAATCTGA 1173 0.4015 MLQQMPSIWFLKLALKCFDHVAWPLLALGYPLCASVQAIETDSYKETRDLVSYWILLSLIYLFEYAFSRLLLWFQFWPYIKLMIIFWLIIPDFGQASNAYNLIRSCISLNPHAVICRLNNWRKFFVKKDDFLLHAERYVKENGTEALEKLIASKNITYKLDAEATNAIRATDNKEMQQTIEKKLQTEHKAFKDLEVIEKRENPASKQDIPVVPNHAPSQNASPAMVETKGIVGKETAGVELPQSSTHKEMQKEWTCALCHVTTSSEKTLNEHMHGRKHRATCEALKVKNQPVSQKLRSDQYKEALKQKNIINQKNSKTKDGESIVNNMLKGGKEVMDQKVQNPQKKQYVPAGTNHPKFRCEICNVKCPCDITLASHKNGKKHMEKVRSLI 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01412 390 SUPERFAMILY beta-beta-alpha zinc fingers 356 389 IPR036236 -
Cca09g01412 390 SMART ZnF_U1_5 355 389 IPR003604 GO:0003676|GO:0008270
Cca09g01412 390 SMART ZnF_U1_5 251 285 IPR003604 GO:0003676|GO:0008270
Cca09g01412 390 PANTHER HVA22-LIKE PROTEINS 5 317 IPR004345 -
Cca09g01412 390 SMART c2h2final6 358 382 IPR013087 -
Cca09g01412 390 SMART c2h2final6 254 278 IPR013087 -
Cca09g01412 390 SUPERFAMILY beta-beta-alpha zinc fingers 246 290 IPR036236 -
Cca09g01412 390 Pfam Zinc-finger of C2H2 type 254 278 - -
Cca09g01412 390 Pfam Zinc-finger of C2H2 type 358 382 - -
Cca09g01412 390 Pfam TB2/DP1, HVA22 family 31 102 IPR004345 -
Cca09g01412 390 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 5 317 - -
Cca09g01412 390 Gene3D Classic Zinc Finger 238 284 - -
Cca09g01412 390 Gene3D Classic Zinc Finger 334 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01412 Cca-Chr9 37392650 37396864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01412 254 386 C2H2 Transcription Factor Family AT2G19380 28.571 5.26e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01412 - - gmx:100812073 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01412 09 37392650 37396864 Cca09g01412 09 37392650 37396864 ECH