Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01411 ATGTTGCGGCTTTCGATTCAACGAGCGAGGAAGTTGAACTCCCTGAGTTTTCTTGACTCAAAATCGTCAACTTTCATTGATGTTATAAACCCAGCAACCCAAGAAGTTGTTTCACAAGTTCCTTTGTCTACGAATGGAGAGTTTAAGGAAGCTGTATTGGCAGCAAAGAAGGCATTTCCACTGTGGCGTAACACACCAATTACAACACGCCAACGGGTTATGTTGAAGCTCCAAGAGCTTATTCGCAGAGATATGGATAAACTTGCTCTGAATGTGACCACTGAACAAGGAAAGACATTAAAGGATGCACAAGGAGATGTGTTTCGTGGTTTAGAGGTGGTAGAACATGCTTGTGGAATGGCAACTCTGCAAATGGGGGAGTTTGTTTCCAATGTATCACATGGAATTGATACTTATAGCATTAGAGAACCACTTGGTGTTTGTGCTGGTATTTGTCCTTTCAACTTTCCTGCAATGATTCCCTTGTGGATGTTCCCTGTCGCTGTTACCTGTGGTAATACCTTTGTTCTAAAACCATCCGAGAAAGACCCAGGTGCTTCTGTACTGCTTGCAGAATTGGCATTGGAGGCTGGGTTGCCTGAGGGTGTCTTAAATATAGTTCACGGAACCCATGATATTGTGAATGCTATTTGTGATGATGACGACATTAAAGCCATATCCTTTGTTGGTTCAAATACTGCCGGAATGCACATATATTCAAGAGCAGCAGCTAAAGGGAAAAGAGTTCAGTCTAACATGGGGGCCAAAAATCATGCAATTGTCATGCCAGATGCAAATGTTGATGCTACTTTAAATGCTTTAGTCGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGTATGGCTCTCAGCACAGTTATTTTTGTTGGTGGCTCACAACAATGGGAAGCTAAACTTATTGAGCGTGCCAAAGCTCTTAAAGTAAACGCTGGAACTGAACCCAATACAGACCTTGGTCCGGTGATTAGCAAACAGGCAAAGGAGCGAATTCACAGATTAGTTCAATCTGGGGTTGAAAGTGGTGCCAAACTACTGCTTGATGGAAGAAATATAGTGGTCCCGGGATATGAATCTGGCAATTTTATTGGCCCAACCATCTTATCAGATATCACTGCCAACATGGAGTGCTACCAGTTGTTGTCATTGCCTTCTGTTAAACTGCTATTTATTCTTACTTTTGACTTTTCCAACAGGTACGGAAATGGTGCTGCTATATTTACTACATCTGGTGTTGCTGCAAGGAAATTTCAGACCGAGGTTGAGGCTGGGCAGGTTGGCATCAATGTTCCCATTCCAGTTCCTTTGCCCTTCTTCTCATTCACAGGCAACAAGGGATCGTTTGCCGGTGATCTCAACTTTTATGGCAAGGCAGGGGTTAACTTCTTTACACAGATCAAGACAATAACACAGCAGTGGAAGGATTCAACTGGCAGTAGCAAGATTAACCTGGCAATGCCAACCTCTCAAAAATATTGA 1494 0.4311 MLRLSIQRARKLNSLSFLDSKSSTFIDVINPATQEVVSQVPLSTNGEFKEAVLAAKKAFPLWRNTPITTRQRVMLKLQELIRRDMDKLALNVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEFVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFVLKPSEKDPGASVLLAELALEAGLPEGVLNIVHGTHDIVNAICDDDDIKAISFVGSNTAGMHIYSRAAAKGKRVQSNMGAKNHAIVMPDANVDATLNALVAAGFGAAGQRCMALSTVIFVGGSQQWEAKLIERAKALKVNAGTEPNTDLGPVISKQAKERIHRLVQSGVESGAKLLLDGRNIVVPGYESGNFIGPTILSDITANMECYQLLSLPSVKLLFILTFDFSNRYGNGAAIFTTSGVAARKFQTEVEAGQVGINVPIPVPLPFFSFTGNKGSFAGDLNFYGKAGVNFFTQIKTITQQWKDSTGSSKINLAMPTSQKY 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01411 497 Pfam Aldehyde dehydrogenase family 18 474 IPR015590 GO:0016491
Cca09g01411 497 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE 11 496 - -
Cca09g01411 497 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 279 290 IPR016160 GO:0016491
Cca09g01411 497 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 28 455 IPR016162 GO:0016491
Cca09g01411 497 SUPERFAMILY ALDH-like 19 479 IPR016161 GO:0016491
Cca09g01411 497 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 254 447 IPR016163 GO:0016620
Cca09g01411 497 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 11 496 IPR010061 GO:0004491
Cca09g01411 497 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 16 478 IPR010061 GO:0004491
Cca09g01411 497 CDD ALDH_F6_MMSDH 17 478 IPR010061 GO:0004491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01411 Cca-Chr9 37379828 37386019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01411 16 462 Aldehyde Dehydrogenase Gene Family AT2G14170 79.736 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01411 K00140 - gmx:100791508 863.218