Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01406 ATGCAGCTACCCCGAACAAGCCAAATTTGTACGATTTCATTCCATTTCCAGTTTTCCACGGTACTCAACATCAATTCTCCAGCCATGGCAGCATCTTTTTACTGTAAGAAAAGTTATGTACGTGCCTCTTTTCATGTAACATTAACACTCTTGCTTCTTGTTCTTGTAACTCCTCGTGTAGCTTCATTAGCATTCAACTATCAGCAATTTGGTGACACGGGAAACGCCTTCAATATTTCAGGAGATGTCGAAGTTGACAGAGAAGTCCTCCAACTCACCATGTCTAAGGCAGATAGTTATGGTAGAGTCATATATAACGAACAATTGCATCTTTGGGACAAGAACACGGGAAGGGTCGCAGATTTCACTACCAATTTCACCTTTACCATCAACAGATTCAGCACCCCAAATAATACCCCGTACGGAGATGGCATCACCTTCTTTCTGGCACAGCCAAACCTTCCACAACCTAATCCAAGAGATGGAAGTGGTATTGGTCTTACGACCCCTGAGCAACTGAAGAGTCTAAATTACGCAGAGAAGCATCCTTTTGTGGCCGTTGAATTTGATACCTTAGTTAATGACTGGGATCCGAAATATTACCATGTGGGTATTGATGTTAATTCTATTAGCACTTATGACACTACAGAATGGTTCGCTAGCATGGATGAGAGAGGATATGAAGCTGATGTTAGTTACGATTCTGGTTCAAACAAATTAAGTGTCACCTTCACCGGATATAAGGATAATGTTACAATTAAACAGAACTTGTTCGCTGTGGTGAATCTGAGTGATGTCTTACCTGAATGGGTTGAGTTTGGTTTCTCTTCAGCAACGGGGTTTACTTATGAGCCACATACTCTTAGCTCATGGTCCTTCAACTCTAGTTTAGACTTGGAATCACACAAGGGTGGAAGCAAAAGAGGGTTGGTGATAGGGCTTAGCGTTGGTGTAGGTGTTTTAATTGTTATTTTGGGGCTAGTTTTACTTGTGAGATGGATGCTGAGGAGTAGAGGTTTGGAGGATGTGTCACTTTTTGACCATGCTATGGACAATGATTTCGAAAGAATGTCTCTGCCCAAGAAGTTTTCCTTTGAAGAACTTGCAAGGGCAACTAATAACTTTGCAAGAGAAAACAAAATTGGAGAGGGGGGTTTTGGGGCAGTCTATAGGGGATTGATGAGAGAATTGAACACCCCTGTTGCAATTAAGAAGGTATCTCGTGGATCAAGACAAGGGGTGAAGGAGTATGCGTCTGAAGTGAAGATCATTAGTCAACTGAGGCATAAAAACTTGGTTCAACTACTTGGGTGGTGCCATCAGCACAATGACCTACTTCTGATTTATGAGTTCATGGAAAATGGAAGCTTGGATTCTTATCTGTTTAAAGGAAAAGGCCTGCTGACATGGAAGGTGAGATATAATATTGCTAGAGGCCTAGCCTCAGCATTATTATACCTACATGAAGAGTGGGAAGAATGTGTGCTTCATAGAGACATAAAATCCAGCAATGTTATGTTGGATTCTAATTTTAATGCAAAGCTTGGAGATTTTGGGTTAGCCAGACTAATGGATCATGGGACAGGATCAAAAACAACAGGTTTAGCAGGAACAATTGGGTATTTGCCTCCTGAAGCTGCCACAAGAGGCAAGGCTAGTAGGGAGTCGGATGTATTCAGTTTTGGAGTCGTGGCTTTGGAGATAGCATGTGGTAGAAAGGCAATTGAGCCAAGTCTTAATGAAGAACAACTCTATTTGGTGGATTGGGTTTGGGAACTACATGACATGGGTGCTATCCTTACAGCATCTGATCAAAGCTTGTATGGACACTTTGATGAGAAAGAAATGGAGAGGTTAATGATTGTTGGCCTTTGGTGTACTCAAATAGATTTTCTTGTGAGGCCTACAATTAGGCAAGTTGTCCAGGTGCTTAATTTTGAAGCTCCATTGCCCACTCTCACACCAAGGGTGCCAGCATCTACCTATAATGCATCTTTCAGCTATGTTCCTTCTAGTATTCCTGCTTTGGCAAATAACCACCAACCTGTGTCCTCATCTTCAGGCAGTAGCTTATTCACCGGATCCTCACAATCCAACACAACTCTTGAAGTCATTTCTCCATCAGCTGCATATTTTCATACATATTAA 2148 0.4176 MQLPRTSQICTISFHFQFSTVLNINSPAMAASFYCKKSYVRASFHVTLTLLLLVLVTPRVASLAFNYQQFGDTGNAFNISGDVEVDREVLQLTMSKADSYGRVIYNEQLHLWDKNTGRVADFTTNFTFTINRFSTPNNTPYGDGITFFLAQPNLPQPNPRDGSGIGLTTPEQLKSLNYAEKHPFVAVEFDTLVNDWDPKYYHVGIDVNSISTYDTTEWFASMDERGYEADVSYDSGSNKLSVTFTGYKDNVTIKQNLFAVVNLSDVLPEWVEFGFSSATGFTYEPHTLSSWSFNSSLDLESHKGGSKRGLVIGLSVGVGVLIVILGLVLLVRWMLRSRGLEDVSLFDHAMDNDFERMSLPKKFSFEELARATNNFARENKIGEGGFGAVYRGLMRELNTPVAIKKVSRGSRQGVKEYASEVKIISQLRHKNLVQLLGWCHQHNDLLLIYEFMENGSLDSYLFKGKGLLTWKVRYNIARGLASALLYLHEEWEECVLHRDIKSSNVMLDSNFNAKLGDFGLARLMDHGTGSKTTGLAGTIGYLPPEAATRGKASRESDVFSFGVVALEIACGRKAIEPSLNEEQLYLVDWVWELHDMGAILTASDQSLYGHFDEKEMERLMIVGLWCTQIDFLVRPTIRQVVQVLNFEAPLPTLTPRVPASTYNASFSYVPSSIPALANNHQPVSSSSGSSLFTGSSQSNTTLEVISPSAAYFHTY 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01406 715 ProSitePatterns Protein kinases ATP-binding region signature. 381 405 IPR017441 GO:0005524
Cca09g01406 715 Pfam Protein kinase domain 376 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01406 715 ProSitePatterns Legume lectins alpha-chain signature. 267 276 IPR000985 -
Cca09g01406 715 CDD STKc_IRAK 381 645 - -
Cca09g01406 715 PANTHER LECTIN RECEPTOR KINASE 46 713 - -
Cca09g01406 715 ProSitePatterns Legume lectins beta-chain signature. 185 191 IPR019825 -
Cca09g01406 715 PANTHER - 46 713 - -
Cca09g01406 715 ProSiteProfiles Protein kinase domain profile. 375 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01406 715 Gene3D Transferase(Phosphotransferase) domain 1 452 665 - -
Cca09g01406 715 SUPERFAMILY Concanavalin A-like lectins/glucanases 61 298 IPR013320 -
Cca09g01406 715 Gene3D Phosphorylase Kinase; domain 1 360 451 - -
Cca09g01406 715 Pfam Legume lectin domain 63 300 IPR001220 GO:0030246
Cca09g01406 715 Gene3D - 61 311 - -
Cca09g01406 715 CDD lectin_legume_LecRK_Arcelin_ConA 63 297 IPR001220 GO:0030246
Cca09g01406 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Cca09g01406 715 SMART serkin_6 375 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01406 715 SUPERFAMILY Protein kinase-like (PK-like) 359 674 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01406 Cca-Chr9 37351223 37353578 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01406 47 663 Receptor kinase-like Gene Family AT5G10530 45.628 2.52e-175 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca09g01406 Pkinase 7.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01406 - - gmx:100783420 1030.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01406 09 37351223 37353578 Cca09g01406 09 37351223 37353578 ECH
Cca09g01406 09 37351223 37353578 Cca08g02626 08 60699697 60701709 PCT