Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01405 ATGTTGTTATCTATTTTGTTCCTCTTGATTATCCCATATGCTTCCTCTCTATCCTTTAACTACTCTAGTTTCGATCCTAATGATAAGAGCATAATATATGGGGGATCAGCAAACCCTGTTGCACCAACTATCCAACTCACAAGAAACCAAGTGGACAAGAGCATGATTGGAAGCATTGGTCGTGCCACATATTACCAACCCATGCACCTATGGGACAAAGCCACAGGGAATCTCACAGATTTCACCACCCGTTTCTCTTTTGTCATAGATTCTCAGAACCGAAGTAAATATGGAGATGGGATTGCATTCTTCCTTGCCCCTGCTGGTGCAAAGATTCCTAATGCCAGAAAAGGAGGTTCTATGGGTCTCACACTTGATAACCAACCACTGAATTCCACTCAGAATCCATTTGTTGCTGTGGAGTTTGATATCTATCAGAATGGATGGGATCCACCCCGTGAACATGTTGGAATCGACATCAACTCTATGAGATCTGTTGCTAATGTGACGTGGTTGGCCGATATCAAGGAAGGGAAACTCAATGAGGCTTGGATCAGTTACAATTCTAGTTCACTAAACTTGAGTGTTGTGTTCACTGGTTTTATCAATGATACCATTCAGCAGCAACATCTATCTGTCATACTTGATCTGAGGCTTCATTTACCAGAGTTGGTTACGTTTGGCTTCTCAGCTGCCACGGGAAATGCAACTGCTATACATAGTCTTAATTCATGGGATTTTAGCTCAACTTTGGCAGCAGAAGAAAACATAACAAAAGGAGGAGGAGACCCAGTTGCAAGGTCTCCAATTTCCAATATATATCCCAATAAGAAGAAAAAGGACAAGACAGGTTTAGCAGTGGGGTTAGGTGTTGGTGGTTTTGTTTTGATTGGTGGGTTGTGTTTGATTTCAATTGGCTTGTGGAAGAAAGGAACCAATGAAGAGGGAGATCATGATATTGAAGAGTATATGGGTGAGGATTTTGGAAGGGGGGCAGGACCCCGGAAGTATTCATATGCTGAACTAGCACAAGCAGCTAATAGTTTCAAAGATGAGCACAAGCTAGGACAGGGAGGATTTGGAGGAGTTTATAGGGGTTATCTTAAAGACATAAAGTCTCATGTTGCAATTAAGAGGGTGTCCGAAGATTCTGATCAAGGGATAAAGGAGTTTGCATCAGAAGTAAGGACTATTAGCCGGTTAAGGCATCGAaatctagtgaacttgattgGAAGGGCTAGTAAGGAATCAGATATCTACAGTTTTGGAGTTGTGGCTTTAGAAATAGCTAGTGGAAGAAAACCCATTAACTTCAAGGCTCAAGAAAATGAAATAAACATTGTGGAGTGGGTGTGGGGACTCTATGGAAGAGGGAGAATTCTTGAAGCAGCAGATCCAAGACTAGATGGGGATTTTGAAGAGGAGCAAATCAAATGCTTGATGATTGTTGGCCTTTGGTGTGCTCACCCTGACCATAATAATAGGCCTTCTATAAGACAAGCAATTCAAGTGCTTAACTTTGAAGCTCCCTTGCCTAATCTTCCATCATCTTTGCCTGTTCCAACATATCTTGAGCACCCACTGCACCTATCTATAGCCCCATTCACCATAAATGCTTCAGAGGAGGCTCAAAACCAGATCACAAGCTTCAGTTCAAACACAAACTCCTCTGGCTTCACTACAACTTCTGATGATGCTTCTCCCTCTGTGTCGCTTCTGTACTCGCGGTGA 1731 0.4206 MLLSILFLLIIPYASSLSFNYSSFDPNDKSIIYGGSANPVAPTIQLTRNQVDKSMIGSIGRATYYQPMHLWDKATGNLTDFTTRFSFVIDSQNRSKYGDGIAFFLAPAGAKIPNARKGGSMGLTLDNQPLNSTQNPFVAVEFDIYQNGWDPPREHVGIDINSMRSVANVTWLADIKEGKLNEAWISYNSSSLNLSVVFTGFINDTIQQQHLSVILDLRLHLPELVTFGFSAATGNATAIHSLNSWDFSSTLAAEENITKGGGDPVARSPISNIYPNKKKKDKTGLAVGLGVGGFVLIGGLCLISIGLWKKGTNEEGDHDIEEYMGEDFGRGAGPRKYSYAELAQAANSFKDEHKLGQGGFGGVYRGYLKDIKSHVAIKRVSEDSDQGIKEFASEVRTISRLRHRNLVNLIGRASKESDIYSFGVVALEIASGRKPINFKAQENEINIVEWVWGLYGRGRILEAADPRLDGDFEEEQIKCLMIVGLWCAHPDHNNRPSIRQAIQVLNFEAPLPNLPSSLPVPTYLEHPLHLSIAPFTINASEEAQNQITSFSSNTNSSGFTTTSDDASPSVSLLYSR 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01405 576 Gene3D Phosphorylase Kinase; domain 1 324 415 - -
Cca09g01405 576 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524
Cca09g01405 576 CDD lectin_legume_LecRK_Arcelin_ConA 17 251 IPR001220 GO:0030246
Cca09g01405 576 MobiDBLite consensus disorder prediction 549 576 - -
Cca09g01405 576 SUPERFAMILY Concanavalin A-like lectins/glucanases 14 253 IPR013320 -
Cca09g01405 576 Gene3D Transferase(Phosphotransferase) domain 1 416 506 - -
Cca09g01405 576 Pfam Legume lectin domain 16 256 IPR001220 GO:0030246
Cca09g01405 576 SUPERFAMILY Protein kinase-like (PK-like) 336 531 IPR011009 -
Cca09g01405 576 Gene3D - 14 260 - -
Cca09g01405 576 ProSiteProfiles Protein kinase domain profile. 349 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01405 576 PANTHER - 6 411 - -
Cca09g01405 576 PANTHER - 411 574 - -
Cca09g01405 576 Pfam Protein kinase domain 349 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01405 576 PANTHER RECEPTOR LECTIN KINASE 6 411 - -
Cca09g01405 576 PANTHER RECEPTOR LECTIN KINASE 411 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01405 Cca-Chr9 37345772 37347841 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01405 411 523 Receptor kinase-like Gene Family AT5G10530 61.207 3.64e-40 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca09g01405 Lectin_legB 5e-71 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01405 - - gsj:114419429 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01405 09 37345772 37347841 Cca09g01405 09 37345772 37347841 ECH