Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01402 ATGGCTGGTTGTGGATGGCAGTTTGGTCTGCTGTTCAGGACAACCATTTTATTCATCCTAATAATCCCCATTGCAAATGCTCAGCCTCAGTCTTTTCACTACCCCTACTTTAACTCAACTTATGTTAAGCAGCTCAATCTGGAAGGTAATGCTTCTTCCTCAGGTTCTGCTATCCAACTCACAGTGAATGCAATGAACCCAAACAACAAGTTTGGGACAGTGGGGCGTGTCACGTATCCCAAGCTAATAAATCTTTGGGACAAAAGTTCAAATGAAGTAAAAGACTTCACCACTAACTTTTCCTTTGTTGTTTCCTCAAATAAGAGTCCTTATGGAGATGGTTTAGCATTCTTCCTTGCAAGTCCAAATCTGGTAATCATAAGTGATATATTACTAATGGGAGGAAGCCTTGGCATTGGCCTTGTGGATGATAAGATAAATAGCCTCTCACCAGATTATAAATATGTGGCAGTGGAGTTTGACACTTACTCAAACACATGGGATCCAGATGGTGCACATGTAGGTGTAAATATCAACACTATGAAGTCTGAAATGTATGAGAAATGGTCGACAAATATTACACAAGGGGAAGTTTGTAACTGTAGTATTGTATACAATTCCAGAAGCAATATTTTGAACGTTTATTACACTGGATACAATTTCCGTGATGGGCATGCAACACAGGTTACACGCCAACTTTCACACCACGTTGATATCACACAGATATTACCTGAGTCTGTTGTTGTTGGCATATCAGCTGCAACAGGAGATTATGCTGAGGAACATACCCTGCTGTCATGGTCATTTAGTACAAGTACAAGTGAGGTCGATCGAGTGAAGGAATGCTGGTTACTCAGCAAAAGAATGTTGGAGGGAATAGGAATTGGAACCGGTTTGTTTTTTAGTTTGTTTGGGATGATTCACATTTTATTAAGGAGGCTGACCAAAGGAAAAGAAGAAGATTGCATTTCAGAAGCCACTTCTGATCTGAAGATGGATCATGTATTCGTGGACACTGGGCCTAAGAAGATTAGTTATCATGAATTGGTAAGTGCAACCAACAATTTTGATGAGACACAGAAGCTAGGCCAAGGAGGTTTTGGTGGTGTTTATAGAGGTTATTTCAAAGACTCAAACACCTATGCTGCTATAAAGAGGATATCAGCAGGTTCCAAGCAGGGTATAAAACAATACACAGCAGAAGTGAAGATCATTAGCCAATTGAGGCACAGGAATTTGGTAAAACTCACCGGTTGGTTCCATAAGAAGAAAGATCTCATCCTGGTATACGAGTACATGGAAAATGGCAGCTTGGATCATCACCTTTTTCGTGGTGAAATCATCTTGTTATGGAAGGTGAGGTACAACATAGCTCTGGGCTTGGCCTCAGCATTGCTTTACCTACAAGAAGAATGGGAAAAATGTGTGCTTCACAGGGACATTAAATCAAGCAACATAATGTTGGACTCCAACTTCAACCCTAAGCTTGGGGATTTTGGCCTGGCTAGGCTGGTGGATCATGAGAAAGGGTCACCAACCACAGATGTGGCAGGGAACATGGGTTACCTTGCCCCTGAATATATGAACACGGGCAAGGCGAGAAAGGAATCAGACATATTCAGTTTTGGGGTTGTTCTGTTGGAGATAGCCACTGGAAGAAAAGCCATTCACCACAAAGACATGGAGGGTGAAGTGTCATTAGTTGAGTGGGTGTGGGAGCTCTATGGTTTGAGCAATGTGCTTGCCACAGCAGATCCAAACCTATGTGGGGAATTTGATGTGCAGCAAATGGAATGCTTGCTGGTTGTTGGTCTATGGTGTGCAAATCCAGATTCAGCATCCAGACCCTCTATAAGGCAAGTTATTAAAGTTCTTAACTTTGAAGCTCCTTTACCAATTCTCCCACAACAGATTCCAATGCAAGATTTTCTCTGTCCCATGACAAATGAGTTGTTTCTTACAGTTTCATCTTCCTCAAAGGCTACAAGTTAA 1992 0.4167 MAGCGWQFGLLFRTTILFILIIPIANAQPQSFHYPYFNSTYVKQLNLEGNASSSGSAIQLTVNAMNPNNKFGTVGRVTYPKLINLWDKSSNEVKDFTTNFSFVVSSNKSPYGDGLAFFLASPNLVIISDILLMGGSLGIGLVDDKINSLSPDYKYVAVEFDTYSNTWDPDGAHVGVNINTMKSEMYEKWSTNITQGEVCNCSIVYNSRSNILNVYYTGYNFRDGHATQVTRQLSHHVDITQILPESVVVGISAATGDYAEEHTLLSWSFSTSTSEVDRVKECWLLSKRMLEGIGIGTGLFFSLFGMIHILLRRLTKGKEEDCISEATSDLKMDHVFVDTGPKKISYHELVSATNNFDETQKLGQGGFGGVYRGYFKDSNTYAAIKRISAGSKQGIKQYTAEVKIISQLRHRNLVKLTGWFHKKKDLILVYEYMENGSLDHHLFRGEIILLWKVRYNIALGLASALLYLQEEWEKCVLHRDIKSSNIMLDSNFNPKLGDFGLARLVDHEKGSPTTDVAGNMGYLAPEYMNTGKARKESDIFSFGVVLLEIATGRKAIHHKDMEGEVSLVEWVWELYGLSNVLATADPNLCGEFDVQQMECLLVVGLWCANPDSASRPSIRQVIKVLNFEAPLPILPQQIPMQDFLCPMTNELFLTVSSSSKATS 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01402 663 ProSitePatterns Protein kinases ATP-binding region signature. 362 385 IPR017441 GO:0005524
Cca09g01402 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Cca09g01402 663 SMART serkin_6 356 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01402 663 PANTHER - 16 662 - -
Cca09g01402 663 CDD STKc_IRAK 362 626 - -
Cca09g01402 663 Gene3D Transferase(Phosphotransferase) domain 1 433 643 - -
Cca09g01402 663 ProSitePatterns Legume lectins beta-chain signature. 156 162 IPR019825 -
Cca09g01402 663 SUPERFAMILY Protein kinase-like (PK-like) 340 646 IPR011009 -
Cca09g01402 663 Gene3D - 29 284 - -
Cca09g01402 663 Pfam Legume lectin domain 30 274 IPR001220 GO:0030246
Cca09g01402 663 ProSiteProfiles Protein kinase domain profile. 356 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01402 663 PANTHER LECTIN RECEPTOR KINASE 16 662 - -
Cca09g01402 663 Pfam Protein kinase domain 357 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01402 663 Gene3D Phosphorylase Kinase; domain 1 341 432 - -
Cca09g01402 663 CDD lectin_legume_LecRK_Arcelin_ConA 31 272 IPR001220 GO:0030246
Cca09g01402 663 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 273 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01402 Cca-Chr9 37329311 37331302 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01402 18 643 Receptor kinase-like Gene Family AT5G10530 43.281 7.96e-167 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca09g01402 Pkinase 7.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01402 - - cam:101492002 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01402 09 37329311 37331302 Cca09g01402 09 37329311 37331302 ECH
Cca08g02626 08 60699697 60701709 Cca09g01402 09 37329311 37331302 PCT