Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01401 ATGGCTGGTTGTGCATGGCATTTTGGTCTTCTGTTTAGGATAACCATTTTGATTATCCTAATAATCCCCATTGCAAATACTCAATCTCAGTATTTTGATTACCCCAACTTCAATGCAACTAATGTACAGCAACTAAAGTTGGAAGGTAATGCTTCTACCTCAGATTCTGCTATTCAACTCACAATGAACACAGCAGACCCTAACATCAACGGGACAGTAGGAAGAGTCACATATCCAGAGCCAATAAATCTTTGGGACAATTGTTCAAATGAACTGAAGGACTTCACCACCAACTTTTCCTTTGTTGTTTCCTCAAATCAGATTAATTATGGTGAAGGTTTGGCATTCTTTCTAGCAAGCTCAGATCTGCCATCAACAGATCATAAAAATCTAGGAGGAGGAGGCCTTGGTGTTGGCCTTGTGGGTAGTAACGAAAATCTTCTCCAGACAGATTATCAATTTGTGGCAGTGGAGTTTGACACTTACTCAAATGGCTGGGACCCTGATGGCTCACATGTAGGCATAAACATCAACGATATGAGGTCTAAAATACTTGAGAAATGGTGGACAAATATTACAAAAGGGGAAGTTTGTAACTGTAGTATTGTATACAATTCTAGAAAAAATACTTTGAAAGTTTCGTTCACTGGATACAAATTATTTGCTGGGGATGAAATACAGATTACACAACACCTTTCATACGACGTTAATATCATAGATCAATTACCAAAGTCGGTAATTGTTGGCATATCAGCTGCAACAGGAGCATATGCTGAGGAACATACACTGCTGTCATGGTCATTTTGTACAAGCTCACCAAGTTATAAGGCTGAACCAAAGAAGAAAAGCAAGGTAATCACCACAAAATTGTTGGAGGGCATTGGAATTGGTACAGGTTTGTTTTTCAGCTTATTAGCGTTGGTCTACATTTTTTTATGGAGGAAGAACAAAAGAAAAGAAGGACGCACTTCAGAAGCCACTTCTCATCCGAAGATGGATGATGAACTCCAAAAGAGGCCCAAGGAGATTGGTTATAATGAATTGATCACTGCAACCAATAACTTTGAAGCGACACAGAAGCTTGGCCAGGGTGGTTTTGGTGGCGTTTATAAAGTTTATTTCAAAGACTCAAATTCCAATGTTGCTATAAAGAGGATATCAGCAGGTTCAGCACATGCTTTGAAGGATTACACAGCGGAAGTAACGATCATTAGCCAATTGAGGCACAGGAATTTGGTGAGACTCACCGGTTGGTGCCACAAGAAGAATGATCTTTTTCTAATATACGAGTACATGCCAAATGGAAGCTTAGATTCTTGTCTTTTTGGTGGAGAAAAGTTGTTGCCGTGGGAGGTGAGGTACAATTTAGCTCTGGACTTGGCATCAGCATTGCTATACCTTCAGGAAGAATGGGAAAAATGTGTGCTTCATAGGGACATCAAATCAAGCAACATAATGTTGGACTCCAATTTCAATGCTAAGCTTGGGGATTTTGGCCTGGCTAGGCTGGTGGACCATGAGAAAGGGTCACATACCACAGTTATGGAAGGGACAATTGGTTACCTTGCCCCTAAATATATGACCACAGGCAAGGCTGGAAAGGAATCTGACATATTCAGTTTTGGGGTTGTTTTGTTGGAGGTAGCCACTGGGAGAAAAGCCATTCACCACAAAGACATGGAGGGTCAAGTATCATTAGTTGAGTGGGTGTGGAAGCTCTATGGATTGAGAAATCTCCTTGCAGCAGCAGATCCAAACCTATGTGGGGAATTTAATGTGCAGCAATTGGGATGCTTACTGGTTGTTGGTCTTTGGTGTGCAAATCCAGATTGCGCATCCAGACCCAATATAAGGCAAGTGATTCAGGTGCTCAAGTTCGAAGCTGCCTTACCAAATCTCCCACAACAGATCCCGCACAACCCTAGTATCCCT 1932 0.4136 MAGCAWHFGLLFRITILIILIIPIANTQSQYFDYPNFNATNVQQLKLEGNASTSDSAIQLTMNTADPNINGTVGRVTYPEPINLWDNCSNELKDFTTNFSFVVSSNQINYGEGLAFFLASSDLPSTDHKNLGGGGLGVGLVGSNENLLQTDYQFVAVEFDTYSNGWDPDGSHVGININDMRSKILEKWWTNITKGEVCNCSIVYNSRKNTLKVSFTGYKLFAGDEIQITQHLSYDVNIIDQLPKSVIVGISAATGAYAEEHTLLSWSFCTSSPSYKAEPKKKSKVITTKLLEGIGIGTGLFFSLLALVYIFLWRKNKRKEGRTSEATSHPKMDDELQKRPKEIGYNELITATNNFEATQKLGQGGFGGVYKVYFKDSNSNVAIKRISAGSAHALKDYTAEVTIISQLRHRNLVRLTGWCHKKNDLFLIYEYMPNGSLDSCLFGGEKLLPWEVRYNLALDLASALLYLQEEWEKCVLHRDIKSSNIMLDSNFNAKLGDFGLARLVDHEKGSHTTVMEGTIGYLAPKYMTTGKAGKESDIFSFGVVLLEVATGRKAIHHKDMEGQVSLVEWVWKLYGLRNLLAAADPNLCGEFNVQQLGCLLVVGLWCANPDCASRPNIRQVIQVLKFEAALPNLPQQIPHNPSIP 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01401 644 Gene3D - 28 286 - -
Cca09g01401 644 PANTHER LECTIN RECEPTOR KINASE 16 642 - -
Cca09g01401 644 Pfam Legume lectin domain 31 282 IPR001220 GO:0030246
Cca09g01401 644 ProSitePatterns Legume lectins beta-chain signature. 155 161 IPR019825 -
Cca09g01401 644 Gene3D Phosphorylase Kinase; domain 1 340 431 - -
Cca09g01401 644 CDD lectin_legume_LecRK_Arcelin_ConA 32 268 IPR001220 GO:0030246
Cca09g01401 644 Pfam Protein kinase domain 355 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01401 644 Gene3D Transferase(Phosphotransferase) domain 1 432 640 - -
Cca09g01401 644 ProSitePatterns Protein kinases ATP-binding region signature. 361 384 IPR017441 GO:0005524
Cca09g01401 644 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 281 IPR013320 -
Cca09g01401 644 SMART serkin_6 355 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01401 644 ProSiteProfiles Protein kinase domain profile. 355 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01401 644 PANTHER - 16 642 - -
Cca09g01401 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Cca09g01401 644 SUPERFAMILY Protein kinase-like (PK-like) 338 626 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01401 Cca-Chr9 37320358 37322289 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01401 10 638 Receptor kinase-like Gene Family AT5G10530 42.146 3.00e-159 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca09g01401 Pkinase 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01401 - - cam:101492002 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01401 09 37320358 37322289 Cca08g02621 08 60613288 60627452 PCT