Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01400 ATGGCTTTGTGGCATAATAGTCTTCATCATAATCCAACTCTTCTTCTCTGCTATGCGATGGGAACCATTCTCATCCTCCAAATAATTTCTCTTACAAACTCTCTATCATTTAACCACCCCTACTTTACAAATGGTGATGTCAAGTGGGAAGGTGATGCTTCAATTCTAAAAGGAGCCATCCAAGTCACTTCCAACACCATGGACCAAAACAACAATTATAGTGTTGGGAGAGTCACAAGTTATAAACAGATGCTCCTCTGGGACACGAACTCTGGAAAGCTTGCTGATTTCACTACTGAATTTTCCTTTGTTATTTTTTCAGATAAGAGTTATTATGGAGATGGAATGGCATTCTTCCTGGCTGATCCTAATCTTCCACTTCTGAAGCACATTAAAGAAGGAGGTGGTCTTGGCCTTGTGGATGGCAACCAAGTGTTGAATTCAACTAAACACCCATTTGTAGCAGTGGAGTTTGACACCTTCCACAATCAATGGGACCCTTCAGGTGGCACTCATGTAGGCCTGAATTTCAACTCTATGAAGTCTGACATAACTAAGCCATGGTTCACAGATATTCAAACATGGAGTGTTTATAATTGCAGCATTGAGTACAATTCAAGCACTCATAATTTGAGCGTTTCATTCACTGCGTACAGTGATGATGAGCAAGTTGAAGAATACATATCATACAAGGTTGACTTGAGAAAGTACTTACCAGGGAGGGTTATTCTTGGTTTCTCAGCCGCAACAGGAAGATTGTATGAGGTGCATACACTGAGATCATGGTCATTTAGTTCAAGTCTACAAAGTGATGACAACATAAATGAGATAAAACCAAAAGCAGCCCCACCAAACTCCAATCCTGTTTCTGAAAAGGAAAACAAGATAGGATTGTGGGCGGGGCTTGGAATTGGTGTAGGCTTGTTTTTGACTCTTTTGAGTTTGTTAGTGCTGGTTTGTATTTTATTGAGGAAAAAGATTAGAGGGAGAAAAGAAGAGTTAGCTTTTGATCTCAGCATGGGTGATGAATTCCCAAAGGGCACTGGACCTAAGAGGTTTGACTATAATGAACTAGTAAGAGCTACAAACAAGTTTGCAGAGTCAGAGAAGCTGGGGCAAGGTGGTTTTGGTGGTGTGTATAAAGGTTATTTGAAGGACTTAAAGTCCTATGTTGCTATCAAGAGGATATCAAGAGAGTCTAGACAGGGAATGAAGGAATATGTGACTGAAGTGAAGGTCATAAGCCAATTGAGGCATAGGAATCTAGTACAACTTATTGGTTGGTGTCATAGGAAGAATGACTTTCTCCTCATATATGAGTTCATGCCAAATGGAAGCCTAGATTCTCATCTATACGGTGTGAAAAGCTTCTTAACATGGAGAGTGAGGTATAACATAGCTCTTGGCTTGGGTTCAGCATTGCTTTACCTACAAGAAGAGTGGGAGCAGTGTGTGATTCATAGGGACATTAAATCAAGCAACATTATGTTGGATTCAAGTTTCAATGCCAAGCTTGGTGATTTTGGTTTGGCTAGGCTGGTGGATCATGAGAAAGGGTCACAAACCACACGTATAGCTGGGACTAGGGGCTATATTGCTCCTGAATATTTCACTTCAGGAAAGGCTACTAAGGAATCTGATATATACAGTTTTGGGGTGGTGTTATTGGAGATAGCCAGTGGAAGAAAACCTGTTGAACTAGAAGCCGAGGAGGGACAGATATCTGTGATTGAGTGGGTTTGGAACCTCTATGGATTGGGAAGGTTCCTTGAAGCAGTTGACCCAAAGTTATGTGGAGAATTTGATGAAAAACAAATGGAACGTTTAGTGGTTGTTGGCCTTTGGTGTGTTCATCCAGATTATTCATTCAGGCCTTCCATAAGGCAAGTGATTCAGGTGCTTAAATTTGAGTCTTCTTTACCTATTCTCCCAGAAATGATGCCTGTGCCAACTTATCTTCCTCCAACAATAAAAGCACTTTTTTCTTCAGTTTCGTCTTCCTTTTGGGGTAGAAGTTAG 2019 0.4076 MALWHNSLHHNPTLLLCYAMGTILILQIISLTNSLSFNHPYFTNGDVKWEGDASILKGAIQVTSNTMDQNNNYSVGRVTSYKQMLLWDTNSGKLADFTTEFSFVIFSDKSYYGDGMAFFLADPNLPLLKHIKEGGGLGLVDGNQVLNSTKHPFVAVEFDTFHNQWDPSGGTHVGLNFNSMKSDITKPWFTDIQTWSVYNCSIEYNSSTHNLSVSFTAYSDDEQVEEYISYKVDLRKYLPGRVILGFSAATGRLYEVHTLRSWSFSSSLQSDDNINEIKPKAAPPNSNPVSEKENKIGLWAGLGIGVGLFLTLLSLLVLVCILLRKKIRGRKEELAFDLSMGDEFPKGTGPKRFDYNELVRATNKFAESEKLGQGGFGGVYKGYLKDLKSYVAIKRISRESRQGMKEYVTEVKVISQLRHRNLVQLIGWCHRKNDFLLIYEFMPNGSLDSHLYGVKSFLTWRVRYNIALGLGSALLYLQEEWEQCVIHRDIKSSNIMLDSSFNAKLGDFGLARLVDHEKGSQTTRIAGTRGYIAPEYFTSGKATKESDIYSFGVVLLEIASGRKPVELEAEEGQISVIEWVWNLYGLGRFLEAVDPKLCGEFDEKQMERLVVVGLWCVHPDYSFRPSIRQVIQVLKFESSLPILPEMMPVPTYLPPTIKALFSSVSSSFWGRS 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01400 672 CDD lectin_legume_LecRK_Arcelin_ConA 35 262 IPR001220 GO:0030246
Cca09g01400 672 ProSiteProfiles Protein kinase domain profile. 365 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01400 672 ProSitePatterns Protein kinases ATP-binding region signature. 371 394 IPR017441 GO:0005524
Cca09g01400 672 Pfam Protein kinase domain 366 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01400 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 485 497 IPR008271 GO:0004672|GO:0006468
Cca09g01400 672 PANTHER - 19 671 - -
Cca09g01400 672 SUPERFAMILY Concanavalin A-like lectins/glucanases 34 272 IPR013320 -
Cca09g01400 672 PANTHER L-TYPE LECTIN-DOMAIN RECEPTOR KINASE 19 671 - -
Cca09g01400 672 SMART serkin_6 365 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01400 672 CDD STKc_IRAK 371 635 - -
Cca09g01400 672 Gene3D - 32 286 - -
Cca09g01400 672 Gene3D Transferase(Phosphotransferase) domain 1 442 654 - -
Cca09g01400 672 Gene3D Phosphorylase Kinase; domain 1 350 441 - -
Cca09g01400 672 Pfam Legume lectin domain 34 276 IPR001220 GO:0030246
Cca09g01400 672 ProSitePatterns Legume lectins beta-chain signature. 154 160 IPR019825 -
Cca09g01400 672 SUPERFAMILY Protein kinase-like (PK-like) 349 659 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01400 Cca-Chr9 37303826 37305844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01400 11 652 Receptor kinase-like Gene Family AT5G10530 47.032 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca09g01400 Pkinase 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01400 - - gmx:100780181 1129.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01400 09 37303826 37305844 Cca09g01400 09 37303826 37305844 ECH
Cca08g02621 08 60613288 60627452 Cca09g01400 09 37303826 37305844 PCT