Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01399 ATGAAATCCGTTATTGAGCGCTACAACAAAGTCAAAGAGGACCATTATCAGCTAATGAATCCTGCTTCACAAGTCAAGTTTTGGCAGAGAGAAGCTGCAAGCTTGAGGCAACAAGTGCAGTACATGCAGGAATACCACAGGAAATTGATGGGCGAAGAACTTTCTGGATTGGGTATTAAAGAACTAGGAAATCTGGAAAATCAACTGGAGATGAGTTTAAAGGGTGTTCGCATGAAAAAGGATCAAATTCTAACTAATGAGGTCAAAGAACTACACCAAAAGGGAAGCCTCGTGCATCAACAAAATGTAGAACTTCATAGAAAGATAAACCTCATCCACAAGGAAAATGCAGAATTACAAAAGGTTATTGAAGAAAAGCATAGAAAAGAAGATATTGCAACATCCAATCCTCCTTACACTATCAACTATGGATATGATATGCTTACGCCTATCAGTCTCCATCTAAGCCAGCCACAGCCTCAACACGGTGAACCACCAGCCAAAGCAATGAAACTGGGATTACAGCTGCATTAG 534 0.4026 MKSVIERYNKVKEDHYQLMNPASQVKFWQREAASLRQQVQYMQEYHRKLMGEELSGLGIKELGNLENQLEMSLKGVRMKKDQILTNEVKELHQKGSLVHQQNVELHRKINLIHKENAELQKVIEEKHRKEDIATSNPPYTINYGYDMLTPISLHLSQPQPQHGEPPAKAMKLGLQLH 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01399 177 ProSiteProfiles K-box domain profile. 25 115 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca09g01399 177 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 176 - -
Cca09g01399 177 MobiDBLite consensus disorder prediction 156 177 - -
Cca09g01399 177 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 176 - -
Cca09g01399 177 Pfam K-box region 22 109 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01399 Cca-Chr9 37266062 37273200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01399 1 172 MADS-box Gene Family AT3G57230 48.295 2.51e-50 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01399 K09264 - tcc:18608170 257.299