Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01398 ATGGGGAGAGGAAAGATTGCTATTCAAAGAATCGAAAAATCGACGAGCCGGCAAGTAACTTTCTGCAAGAGAAGAAATGGATTAGTGAAGAAAACTAGAGAGCTATCAATTCTCTGTGATGCTGAAGTTGGACTCATTGTGTTTTCCTGCACGGGCAGGCTTTATGAATACTCAAACACAAGTATGAAAACAATTATTGAGCGCTTTAACAAGAAAAATGAGGATCATCATCGACTTATGGATTCTACTGCGGAGGTCAAGTTATGGCAGAGAGAAGCAGCAAACTTGAGGCAACAACTGCTGCATTTTCAAGAATGCCACAGCCAACTGATGGGTGAAGAACTTTCTGCTTTGGATATTGATCAGCTGAAGCATCTGGAAGATCAATTGGAAACGGGTTTGAAGAATGTTCGCACAAGAAAGGATCAAATGTTTATAGATGAGATCAAAGAATTACAACAAAAGGGAAGCCTCGTTCAGCAACAAAAGGAAGAACTTCTTAAAAAGATAGACCTTATCCACAAAGAAAATGCAGAACTAAAAAAGGTTGTTGAAGCAAGGCGTGCAGAAGAAAAAGAATCACTGAATCCTTCACATGCTATCAGCAATGGATATGATAAACTTTACCCTAACAGTCTGCAACAAAGCCAGTCTCAGCCTCAACACAGGGCACCATCGGATGAAGCGATCATTCTGGGGTATTCCCTCAAATTGAAGATATAA 723 0.4011 MGRGKIAIQRIEKSTSRQVTFCKRRNGLVKKTRELSILCDAEVGLIVFSCTGRLYEYSNTSMKTIIERFNKKNEDHHRLMDSTAEVKLWQREAANLRQQLLHFQECHSQLMGEELSALDIDQLKHLEDQLETGLKNVRTRKDQMFIDEIKELQQKGSLVQQQKEELLKKIDLIHKENAELKKVVEARRAEEKESLNPSHAISNGYDKLYPNSLQQSQSQPQHRAPSDEAIILGYSLKLKI 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01398 240 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Cca09g01398 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca09g01398 240 Coils Coil 149 193 - -
Cca09g01398 240 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Cca09g01398 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca09g01398 240 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca09g01398 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca09g01398 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca09g01398 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca09g01398 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca09g01398 240 Coils Coil 79 99 - -
Cca09g01398 240 MobiDBLite consensus disorder prediction 189 226 - -
Cca09g01398 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca09g01398 240 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca09g01398 240 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Cca09g01398 240 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 239 - -
Cca09g01398 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 239 - -
Cca09g01398 240 MobiDBLite consensus disorder prediction 196 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01398 Cca-Chr9 37221175 37239682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01398 1 238 MADS-box Gene Family AT2G14210 53.527 1.57e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca09g01398 K-box 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01398 K09264 - gmx:100779119 340.887