Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01394 ATGGAGAACTACCAGTACCCGTCGTACCCGGACTCCGGCGACTCCTCGCCGCGCTCAAGAGAGATCGACTTCGAGAACCCACCGCCGTGGGACGACCAGCAAAACCAAACCTACAAAGCAAAGTTCATGTGCAGCTACGGCGGCAAGATCCAGCCGCGCACGCACGACAACCAGCTCTCCTACGTCGGCGGCGACACCAAGATCCTCGCCGTCGACCGCTCCATCAAGTTCACCACCTTCCTCTCGAAGCTCGCGGCGGTCTGCGACACGCCGCCGCAGGAGCTCACCTTCAAGTACCAGCTCCCCGGCGAGGACCTGGACGCGCTGATCTCCGTGACGAACGACGACGACCTCGAACACATGATGCACGAGTACGACCGACTCTACCGCCCTAACTCTAAACCCGTGAGAATGAGACTCTTCCTCTTCGCACTTTCCGCAAACCCTAATTCCTCTTTCTCCTCCGATCGCGACGCTGTCAAAACCCCTCCCCTTCCTCCTTCCAACGTCGATTACCTCTTCGGCCTCGACAAGGCCGTCGCTCCTCCTCCCATCGCGCCTTCCTTCGCCGCGGTCAAGTTCCACGATCCCGTTCCGGAGCCCGCCGCGCCGCCGCCGGAGTATCACCCCCGCGCTCCCGCTCCCGCTCCCGCTCCGCCTCCCGTTTCCGATCCCAACGTCAGTACACTCGAAATTCACCGGCAGTTGCATCAGGAGATGCAGCGTTTGCAAGTCGCCGAGAGCGAGTACCGGAGGCGGAGCGAGGATGGATTCGCCGCGGGAGGGGATTATTACTTGCAGAAGCCGCCGGAGAAGGTTTCGCCGCCGGGATACTGGCCGGAGAAGCAGTTCTCCGGCGAGGGATATCAGACCACCGTCACGACGGCTCCCGGCGGAGGTGACCAGGCGATGTACGTTATTCCGGCGCCGGGGACGTACTACCATGCGCCGATGGTGAGGCCGGCGGCGCAGGGGTACTACGCGGTGCCGAGGATGGGTTCGGAGGGGTACCGCGAGCAGGCGGTGTACGGCGGCGTTGCGCAGCCGAAAGCGGCGTTTTCGTCGGCGGGGGCGGTTAAGGGGTCGGCGTACGCGGAGGGGTACGGCGTGGTGAGGCCTGGCGGGGTGACGGAGAATGCGGCGTACACGCAGGTGGCGTATGATAGTGCGAGTGGGAGGCAGGTTTACTATACTGCGCCGGGAGGGGTGGTGCAGTATCAAGGAGTTGCGGATGCGAGGCCGGTAGGGGTTTCGGTGGCCCAGGATGTGGAAGACATGAGTGAGAACGAATATGGATACTCATATCCTGCTCAAGGTCCTTGTCAAGGGCCACCTCCAGTGGCTGCACCTCCATAG 1356 0.6283 MENYQYPSYPDSGDSSPRSREIDFENPPPWDDQQNQTYKAKFMCSYGGKIQPRTHDNQLSYVGGDTKILAVDRSIKFTTFLSKLAAVCDTPPQELTFKYQLPGEDLDALISVTNDDDLEHMMHEYDRLYRPNSKPVRMRLFLFALSANPNSSFSSDRDAVKTPPLPPSNVDYLFGLDKAVAPPPIAPSFAAVKFHDPVPEPAAPPPEYHPRAPAPAPAPPPVSDPNVSTLEIHRQLHQEMQRLQVAESEYRRRSEDGFAAGGDYYLQKPPEKVSPPGYWPEKQFSGEGYQTTVTTAPGGGDQAMYVIPAPGTYYHAPMVRPAAQGYYAVPRMGSEGYREQAVYGGVAQPKAAFSSAGAVKGSAYAEGYGVVRPGGVTENAAYTQVAYDSASGRQVYYTAPGGVVQYQGVADARPVGVSVAQDVEDMSENEYGYSYPAQGPCQGPPPVAAPP 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01394 451 CDD PB1_UP2 43 143 - -
Cca09g01394 451 Gene3D - 60 144 - -
Cca09g01394 451 MobiDBLite consensus disorder prediction 198 227 - -
Cca09g01394 451 MobiDBLite consensus disorder prediction 1 15 - -
Cca09g01394 451 Pfam PB1 domain 55 143 IPR000270 GO:0005515
Cca09g01394 451 SUPERFAMILY CAD & PB1 domains 55 152 - -
Cca09g01394 451 PANTHER OS05G0427100 PROTEIN-RELATED 1 427 - -
Cca09g01394 451 MobiDBLite consensus disorder prediction 198 224 - -
Cca09g01394 451 SMART PB1_new 54 145 IPR000270 GO:0005515
Cca09g01394 451 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN PROTEIN 1 427 - -
Cca09g01394 451 Coils Coil 233 253 - -
Cca09g01394 451 MobiDBLite consensus disorder prediction 1 34 - -
Cca09g01394 451 MobiDBLite consensus disorder prediction 429 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01394 Cca-Chr9 37178842 37189944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01394 38 158 MAP Kinase Kinase Kinase AT5G57610 42.975 6.88e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01394 - - gmx:100820420 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01394 09 37178842 37189944 Cca08g02611 08 60446442 60448377 PCT