Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01385 ATGGAGATGTCATCCATCAGAGGGTTACCTGATCTGAAGGAGCAGGAAATGGTTGAGGACCCTACCTTTCAACACCAGTGGCACTTGTGTTCTATTGATGACCTTATTATACATAATGATTTTGGTGAGACTGTACAACATAATGCATTTACTTACCCAAATTTCAACTCCAAAACTTCCATGGAAACTGCACTTGTTGACTTTGAAAGACCCACAAAACATCACCAAAACATGAGCTGGAATCCCAGCAAAAATGCTCAAACATCAGAGACAGAGTTTGTTTCTTTCCCAAATCCTTTTTCATTTGTGGGTTCCAATGTCATAAGTCCATTGGGATTAGTGAAGGCCATGGATGAGATGGATTGTCCTATAACCATTAGTAGCACAACTCCTCTAGAAAGTACCTCTCAAGGAACCTTGAGCCAAAAGATTGGCACACGTTCTAAACTTACTCATCCTCAAGATCACATAATAGCTGAAAGGAAACGGCGAGAGAAGCTCAGCCAGCAGTTCATTGCTTTATCTTCCCTTGTTCCCGGACTACAGAAGACGGACAAAGCTTCTGTTCTTGCGGATGCTATCAAATACTTGAAGCAATTGCAAGAGAAAGTGAGGGCTCTTGAGGAGGAACAAAACATGAAGAAAAATGTGGAGTCTGTGGTAATTGTGAAGAAATCTCAACTATCCAATGATGTAAACAACAATTCTTTAGAATATCATGGTCAATTTGACGAGGCACTGCCTGAAATTGAAGCAAGATTTTGTGAGAGAAATGTCCTCATACGAGTTCATTGTGGGAAGAGCAAAGGAGTCGTAGAAAAAACAATCCAGGAAATTGAGAAACTCCATCTGACAGTGACCAATAGCAGTGCCATGATATTTGGGAGATGTTCCCTTGATTTAACAATTATTGCTCAGATGGATATGGAATTTTGCATGGGAGTGAAGGATCTTGTGAGAAACCTACACTCAGCTTTTACATCTTTCATGTGA 993 0.4038 MEMSSIRGLPDLKEQEMVEDPTFQHQWHLCSIDDLIIHNDFGETVQHNAFTYPNFNSKTSMETALVDFERPTKHHQNMSWNPSKNAQTSETEFVSFPNPFSFVGSNVISPLGLVKAMDEMDCPITISSTTPLESTSQGTLSQKIGTRSKLTHPQDHIIAERKRREKLSQQFIALSSLVPGLQKTDKASVLADAIKYLKQLQEKVRALEEEQNMKKNVESVVIVKKSQLSNDVNNNSLEYHGQFDEALPEIEARFCERNVLIRVHCGKSKGVVEKTIQEIEKLHLTVTNSSAMIFGRCSLDLTIIAQMDMEFCMGVKDLVRNLHSAFTSFM 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01385 330 Coils Coil 190 220 - -
Cca09g01385 330 PANTHER BHLH TRANSCRIPTION FACTOR 3 329 - -
Cca09g01385 330 Gene3D - 150 225 IPR036638 GO:0046983
Cca09g01385 330 MobiDBLite consensus disorder prediction 127 150 - -
Cca09g01385 330 CDD bHLH_AtNAI1_like 152 226 - -
Cca09g01385 330 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 3 329 - -
Cca09g01385 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 215 IPR036638 GO:0046983
Cca09g01385 330 Pfam Helix-loop-helix DNA-binding domain 155 201 IPR011598 GO:0046983
Cca09g01385 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Cca09g01385 330 SMART finulus 157 206 IPR011598 GO:0046983
Cca09g01385 330 MobiDBLite consensus disorder prediction 127 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01385 Cca-Chr9 37074553 37077581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01385 133 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 50.746 2.82e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca09g01385 HLH 4.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01385 - - vun:114179595 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01385 09 37074553 37077581 Cca09g01385 09 37074553 37077581 ECH
Cca09g01385 09 37074553 37077581 Cca08g02602 08 60363087 60365708 PCT