Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01370 ATGGCTTCTAAAATAAAAGATGCTATAGTGATCCAGTGCTTCTTGTGTTCCTTGCTCAGTGTTTTCATGGTAGGTCGTGCTGTCGACAGTGATATCTCCTGCTTAAGATCCATCAAGGAGTCCTTGGAAGACCCGTTTAGTCACTTATCACAATGGAACTTCAACAACACGAGCGAAGGTTTCATTTGTGATTTTCCTGGCGTTGAATGCTGGAATAAAAATGAGAATAGAGTGCTAAGTATTAAACTATCAAACATGGGGCTGAAGGGTGAGTTTCCACGTGGCCTTAGGAATTGCTCGTCATCCCATCTGATATATTCACATTCCTCCCTTTCGTTACCACCATCGATCTCTCATATAACAAATTCAGTGGGGAAATTCCAGCAACTTTCGCTAACTGCACGGCCTGTTCCATTGTTCCCACCAGGGTTAGTTTCTGCGGATGATTTTGCCAATAACCGAATAAAACTTTGCGGAGAGCCTTTGCCACCTTGCCGCTCAAGCGATTTCCCTCGATCATTCAAACAAGGCCTGGTTGTTGGTTATGTTTTTTCAGTGACAGTGACTATGGTTATTCTTCATTACATGTCTTACTGTGCACCATGGCAACAATCAAAGCAGAAGAGAAACAAGGCTAAAGAATTCTGCAATCATATTTGTTCCATCGCAGCCAGGAAGGCACACAACTTGCTACTTCTAAAGAGTGAAGAGAAGGCAATCAAAGAGATTGCTGCAGTAACGGAAAGAATGAAGTCCACGATAACGTTTAATGAAGTTAGAGAAGCAACTGACAACTTTTCTATAGACAATGCCATTGGGATTGGGGAAATTGGAATAATGTACGAGGGAAGGCTACTAAATCGTTGGCACCTTGCCGTTAAGAGAGTACTATCCGGTTCTAAACAATTTAAGAAGAAGTTTCTTTTAGAAATAAGGATTCTGGGTAAGTACAAACACACAAATATAGTTCCCCTACTTGGATTCGGCGTAGAGGGAAGGGAAAGGATCCTGGTATACCAATACATGTCAAATGGAAGGCTTTCAAAATGGTTGTGTCCTTTAGAAAGTGAAGTTCAATTGAAATGGCCTCAGAGGATCAAAATAGCACTTGGAGTAGCAAGAGGCTTATCCTGGCTCCATCATACCTGCGATTTGCATGTTGTGCATCTTAACATAAGTTCCGCGTGTGTCTTGCTAGACAAGAATTTTGAACCCAAAATATCCAATTTTGGACACGCCAAATTTATGAATCCCGGTCCAAACACGATGTTTTATGCATGTGATGGGAAGAAGGATGTCTATGACTTTGGGAGTTTGCTTTTGGAGCTAATTACAGGGAAAACATTTAAGGAGTTGTGTGGTTCATCCAATGCTACTTTTAACCTATCTGGTAACCCTTCAATTTTTTATAATGCAATCGATAAGTTTCTGACTGGGGAAGGTTTTGAAAATGAGGTCTACAGTCTCATCAAAGTTGCTTGTAAGTGTGTTCGGCCTTTCCCAGATGAAAGGCCAACGATGCTGGAAGTTTATAACAATATGATCGATATATGGGGGAACGACGTAAATTCAGTGATGGTACCGGCGCACTCAACATGTCTGTTTCTTCTACAATTACGGACAAAATTGTTGAGACATAGAAGACATCAACGGGCATACTCATCCCCTCAATTTTAA 1677 0.412 MASKIKDAIVIQCFLCSLLSVFMVGRAVDSDISCLRSIKESLEDPFSHLSQWNFNNTSEGFICDFPGVECWNKNENRVLSIKLSNMGLKGEFPRGLRNCSSSHLIYSHSSLSLPPSISHITNSVGKFQQLSLTARPVPLFPPGLVSADDFANNRIKLCGEPLPPCRSSDFPRSFKQGLVVGYVFSVTVTMVILHYMSYCAPWQQSKQKRNKAKEFCNHICSIAARKAHNLLLLKSEEKAIKEIAAVTERMKSTITFNEVREATDNFSIDNAIGIGEIGIMYEGRLLNRWHLAVKRVLSGSKQFKKKFLLEIRILGKYKHTNIVPLLGFGVEGRERILVYQYMSNGRLSKWLCPLESEVQLKWPQRIKIALGVARGLSWLHHTCDLHVVHLNISSACVLLDKNFEPKISNFGHAKFMNPGPNTMFYACDGKKDVYDFGSLLLELITGKTFKELCGSSNATFNLSGNPSIFYNAIDKFLTGEGFENEVYSLIKVACKCVRPFPDERPTMLEVYNNMIDIWGNDVNSVMVPAHSTCLFLLQLRTKLLRHRRHQRAYSSPQF 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01370 558 PANTHER RECEPTOR-LIKE PROTEIN 55 4 102 - -
Cca09g01370 558 PANTHER RECEPTOR-LIKE PROTEIN 55 134 515 - -
Cca09g01370 558 Gene3D Ribonuclease Inhibitor 28 155 IPR032675 -
Cca09g01370 558 ProSiteProfiles Protein kinase domain profile. 266 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01370 558 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 4 102 - -
Cca09g01370 558 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 134 515 - -
Cca09g01370 558 Pfam Protein kinase domain 268 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01370 558 SUPERFAMILY Protein kinase-like (PK-like) 250 512 IPR011009 -
Cca09g01370 558 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Cca09g01370 558 Gene3D Phosphorylase Kinase; domain 1 225 341 - -
Cca09g01370 558 Gene3D Transferase(Phosphotransferase) domain 1 342 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01370 Cca-Chr9 36901316 36904061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01370 9 517 Receptor kinase-like Gene Family AT3G28450 29.103 2.63e-66 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca09g01370 Pkinase 1.8e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01370 - - gmx:102664092 619.002