Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01362 ATGAAACGGCCTACTTTGACTCTGATAGTAGGACTTTGCTTAGGCTTTGTGACTGGGGTGGGTTTGGCAATTTCGATTGCAGTATGTGTCATATGTGGAAGGAAGCGCACAAAGGTTGGGAGGAGCAGTTCTCAGAATGCAGTGACCGTTCCTGTTAATGCCATAGCGGTTGATTCTCACTCAACATTATCGGACGGCCTGGAGTCTCCCAGAACATCTGAGTGGAGTAACACGCCTCTATGGTTGGAAAGACTAAGGAAGAAGAGCGCAGTGTCAGTATGTGGAATTCCCAAGTATTCTTACAAATATATACAAAAGGCTACTTCTAATTTCACAACCATCATAGGCAATGGAGCATTTGGTCCTGTTTATAAAGCTCAGATGTCCACAGGTGAGACAGTGGCAGTTAAAGTTCTTGGTACTAATTCAAGACAAGGAGAACAGGAATTTTTAACTGAGGTTTTATTACTTGGAAGATTACATCACAAAAACCTTGTGGATTTGGTGGGGTATGTGGCAGAAAGAAGACAACATATGCTTCTTTTCATTTACACGAGCAATGGCAGTCTTGCTTCCCATTTGTATGGAAAGCATGAGCCATTGAGCTGGGGTTTGAGGCTAAGCATAGCACTAGATGTTGCAAGGGGACTGGAATATCTACATTATGGGGCTTCTCCACCTGTTGTGCATCGTGACATCAAATCTTCCAACATACTTTTGGACCATTCTATGAGAGCCAAGGTCACTGACTTCGGGCTCTCCAGACCAGAGATGATCAAACCTCGCACATCAAATATCAGAGGAACTTTCGGATATCTTGATCCTGAGTATTTGTCTACAAGAACCTTTACTAAGAAAAGTGATGTATATAGTTTTGGTGTACTACTATTTGAGCTTATCACTGGCAGGAATCCACAGCAAGGGCTCATGGAATATGTAAATCTAGCAGCAATGGAAGGTGAGGGTAAGGTTGGATGGGAAGAAATTGTTGACATGCAATTAAACGGAAAGTATGATTTGCATAATCTTAATGACTTGGCTTCACTTGCATTCAAATGTGTTAATGAAGTCTCTAAAAGCCGACCTCCGATGTACGACATTGTTCAAGAATTATCTCAGCTTCGTAAGAGGCATAGTAAAAATCATAGTCGAGCATCTTCTGATGCATTAAAGGAAGTCTCCATTGAAGTGGACCAGCTTGAAACTGACAAGTTTTCAACAATTGAGAGTACAAAGATGCTGCGCAGATTACATAGCCGATGA 1263 0.4188 MKRPTLTLIVGLCLGFVTGVGLAISIAVCVICGRKRTKVGRSSSQNAVTVPVNAIAVDSHSTLSDGLESPRTSEWSNTPLWLERLRKKSAVSVCGIPKYSYKYIQKATSNFTTIIGNGAFGPVYKAQMSTGETVAVKVLGTNSRQGEQEFLTEVLLLGRLHHKNLVDLVGYVAERRQHMLLFIYTSNGSLASHLYGKHEPLSWGLRLSIALDVARGLEYLHYGASPPVVHRDIKSSNILLDHSMRAKVTDFGLSRPEMIKPRTSNIRGTFGYLDPEYLSTRTFTKKSDVYSFGVLLFELITGRNPQQGLMEYVNLAAMEGEGKVGWEEIVDMQLNGKYDLHNLNDLASLAFKCVNEVSKSRPPMYDIVQELSQLRKRHSKNHSRASSDALKEVSIEVDQLETDKFSTIESTKMLRRLHSR 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01362 420 Gene3D Transferase(Phosphotransferase) domain 1 185 400 - -
Cca09g01362 420 CDD STKc_IRAK 115 374 - -
Cca09g01362 420 PANTHER DUAL-SPECIFICITY KINASE DOMAIN PROTEIN 8 405 - -
Cca09g01362 420 ProSiteProfiles Protein kinase domain profile. 109 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01362 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Cca09g01362 420 Pfam Protein tyrosine and serine/threonine kinase 111 371 IPR001245 GO:0004672|GO:0006468
Cca09g01362 420 Gene3D Phosphorylase Kinase; domain 1 75 184 - -
Cca09g01362 420 PANTHER OS01G0253100 PROTEIN 8 405 IPR045271 GO:0004714|GO:0006468
Cca09g01362 420 SUPERFAMILY Protein kinase-like (PK-like) 93 371 IPR011009 -
Cca09g01362 420 SMART serkin_6 109 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01362 Cca-Chr9 36794866 36800254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01362 99 373 Receptor kinase-like Gene Family AT5G48740 44.561 2.06e-69 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Cca09g01362 PK_Tyr_Ser-Thr 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01362 - - gmx:100816549 674.47