Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01354 ATGGCTGAGGAGTTTCAAGCTAGGATTTGTGGCGAAAACTGGTGGAGTAGTACAATTGATTCAACACGAAGTGTATTCCCTCTAAGCTCATCATTGATATCTTCTTCTCCTTGTTCCGTGGCAGCTAATGATGCAGGAAACTATACCACTCGCCAAACTACTGGCATAGATTTGAAACCAACTAATAAGTGTTGTGCTGAAGAGACCAACAATTTGGTTTCAGATACTTACCTTGGTTTTGTTGAAGCACAGAAGCCACATAAGAGTGAATTAGAATCAGCCATGAGTGGAAGTGGTAGCATATTGATCGATTCCACCTTACAGATGATGGGTTTTGGCCTCACATCTTCAACATCACAGAATTGGAATCAGCCTCTATTATTTCGTTGTAATGGAAGGGCAGAGAGCAATTTCCATTCCATGCTTCAGGAAGAAACGGGAATAGATTCTTCTAATTATTCACAAAGGGATTGGATCCCAAAGAGCTTCTCCTCTGGTGGTGGAAACGAAATTGATGATAATTTCAAGCCATTGAACAAGGAATTTTGCGCAGATCACCACCAGAGTCTGAGTTCTTTAACAAGCACTACAGGGTTATCAATTGGATCAGCCTCATCATATGGTAACCCTTCAACGTTACAAGGCTTATTATATGACcctgatcctcatcctcatccacaacctcagcactcaCTTTTCACCAACCGTCCCATGTCCTATTCATCAAAAGCAACTTATGGGACACCCTGCACTGAACTACCTCCAACATGGCCTAAAGTCTCTACTTTTTTGAAGCCCACACCAATTGCAAAGAACCACCCTATTGGACTTCCCTTTTCCAACAACACCACTTTCTGGAATGCTTCCGCCGAGGCACTTAACGACATAAGAGCAGGTACTTTTGCTTCACCACAATCGCAATATCAAACGCCAACCTTTGATGAAGAGAAACCCAATTGCCCAAGAACTCTATTAAACAAGCTCAACGGTGAAGAAACTCTAGACTCAGCATCAATGGCGAAGAAAAATGTTTGTGAACCACCATTAAAGAGGCCAAGAATTGAAACTCCATCCCCATTACCAACTTTTAAGGTTCGGAAAGAGAAGCTAGGGGACCGGGTCACTGCTCTTCAGCAATTAGTTTCACCTTTCGGAAAGACCGACACAGCATCCGTTCTTCAGGAAGCCGTTGATTACATTAAGTTCCTTCACGACCAAGTCAATGGTTTGAGTACTTCATACATGAAAAATGGAGCTCCCATTCAACAGCAACAGGGCTGTGATGATTTGAAAGAGTCAGAAGGACCACAAGAAGATTTAAAAAGCCGAGGGCTATGTCTGGTACCGATATCAAGCACGTTTCCGGTGGCAACAGAAACCACTGCTAGTGCTGAATTGTGGACGCCTACATTCAGAGGCGCACTCTTAAGGTAG 1434 0.4198 MAEEFQARICGENWWSSTIDSTRSVFPLSSSLISSSPCSVAANDAGNYTTRQTTGIDLKPTNKCCAEETNNLVSDTYLGFVEAQKPHKSELESAMSGSGSILIDSTLQMMGFGLTSSTSQNWNQPLLFRCNGRAESNFHSMLQEETGIDSSNYSQRDWIPKSFSSGGGNEIDDNFKPLNKEFCADHHQSLSSLTSTTGLSIGSASSYGNPSTLQGLLYDPDPHPHPQPQHSLFTNRPMSYSSKATYGTPCTELPPTWPKVSTFLKPTPIAKNHPIGLPFSNNTTFWNASAEALNDIRAGTFASPQSQYQTPTFDEEKPNCPRTLLNKLNGEETLDSASMAKKNVCEPPLKRPRIETPSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLQEAVDYIKFLHDQVNGLSTSYMKNGAPIQQQQGCDDLKESEGPQEDLKSRGLCLVPISSTFPVATETTASAELWTPTFRGALLR 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01354 477 Gene3D - 364 428 IPR036638 GO:0046983
Cca09g01354 477 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 98 464 - -
Cca09g01354 477 CDD bHLH_AtbHLH_like 360 411 IPR045239 -
Cca09g01354 477 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 354 403 IPR011598 GO:0046983
Cca09g01354 477 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 364 421 IPR036638 GO:0046983
Cca09g01354 477 PANTHER TRANSCRIPTION FACTOR BHLH123 98 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01354 Cca-Chr9 36637485 36641328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01354 1 477 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 36.566 5.09e-57 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01354 - - gmx:100784084 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01354 09 36637485 36641328 Cca08g02571 08 60067597 60070668 PCT