Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01352 ATGGCGATTCATCTGCCAGACCACTTCAAGTGTCCAATTTCGCTGGAAATAATGTCGGACCCTGTAATACTGTCCTCGGGGCACACCTTCGAGCGTTCCTCAATCCAACGTTGGCTCGACGCAGGCCACAGAACGTGTCCAATTACGAAACTACCCCTCCCGGAGCACCCTTCACTAATCCCCAACCACTCCCTCCGAAGCCTAATCTCCAACTACGCCCTCCTCGCTCCCATTCACCACACCATTTCCCAACCAGAAACCCTAATTTCAACCCTCGCCTCGCCCTCTTCCCCACTCGATTCCAAAATCGACGCCCTCCGCCACCTCACGCGCCTCTCCAAGCGCGACTCCGCCTTCCGCCGCCGCCTCGCCGACTCCGCCGCCGTCCCCGCGCTCCTCGCCGCCGTAGACCACCCCGCGCTCCAGGACAAGGCCCTCCCGCTCCTCCTCAACCTCTCCCTCGACGACGACTCCAAGGTCGGCCTCGTCGCGGAGGGCGTCGTCGCGCGCGTCGTCGCCGTCCTCCGCCGCCCCGCCGCCTCGCCGGACTCCCGCGCCGTGGCCGCCACCATCGTCACCAGCCTCGCCGTCGTCGAGGTCAACAAGGCCACCATCGGCGCCTTCCCCGCGGCGATCGGCGCGCTGGTGGCCATCCTCCGCGACGGCAAGGGCCGGGAGAGGAAGGAGGCCGCCACCGCGCTGTACGCGCTCTGCTCTTTTCCGGATAACCGGAGAAGAGCCGTGGATTGCGGCGCGGTGCCGATTTTGTTCAGGAACGTTGAAATTGGGCTTGAACGCGGTGTTGAGGTTATCGGCGTTTTGGCCAAGTGCAAGGAAGGGAGAGAGCAAATGGAAGGTTATGAGAATTGCGTTCATATTCTTGCTCGCGTTTTGAGGAATGGAAGCTCCAGGGGGGTTCAGTATGCGCTGTTGGCACTCACTTCGCTCTGTTTTTATAGCCAGCAAATGGTTTTAGTGGCTCTGGAAGAAGGGGTTCTGGAAGCTTCTATTGGGTTCGTGGAAGATGATAACGAGAAAGTGATGATGGCAAGTATCAGTTTTGATGGGAAGAAATATTTGTTTGTCTCCTCTGTGGAGGGTTCTTTTGTATCTTGTATATTGAATAATGAGGATGGGCTAGCTCTCTGGTGTTAG 1155 0.587 MAIHLPDHFKCPISLEIMSDPVILSSGHTFERSSIQRWLDAGHRTCPITKLPLPEHPSLIPNHSLRSLISNYALLAPIHHTISQPETLISTLASPSSPLDSKIDALRHLTRLSKRDSAFRRRLADSAAVPALLAAVDHPALQDKALPLLLNLSLDDDSKVGLVAEGVVARVVAVLRRPAASPDSRAVAATIVTSLAVVEVNKATIGAFPAAIGALVAILRDGKGRERKEAATALYALCSFPDNRRRAVDCGAVPILFRNVEIGLERGVEVIGVLAKCKEGREQMEGYENCVHILARVLRNGSSRGVQYALLALTSLCFYSQQMVLVALEEGVLEASIGFVEDDNEKVMMASISFDGKKYLFVSSVEGSFVSCILNNEDGLALWC 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01352 384 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Cca09g01352 384 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Cca09g01352 384 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 350 - -
Cca09g01352 384 SUPERFAMILY RING/U-box 4 73 - -
Cca09g01352 384 Gene3D - 81 264 IPR011989 -
Cca09g01352 384 Gene3D - 265 354 IPR011989 -
Cca09g01352 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 75 IPR013083 -
Cca09g01352 384 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Cca09g01352 384 CDD RING-Ubox_PUB 9 50 IPR045210 -
Cca09g01352 384 SUPERFAMILY ARM repeat 86 352 IPR016024 -
Cca09g01352 384 PANTHER U BOX DOMAIN-CONTAINING 4 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01352 Cca-Chr9 36574176 36575505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01352 1 347 U-box Gene Family AT4G21350 58.101 2.01e-135 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01352 - - gmx:100785141 539.265