Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01350 ATGAAGTTGTTTTCCTTTCATAAAGAGCTTCTCACTCCGTTTTTTCTTCTCACGTTCCTCTACCCTTCTTGCCACTCACTACTCCACACCATCACCGCAAACCACCCCATCAAAGACGGCGACGTTTTGCTCTCCAGCGACCGAGGAAACTTTGCACTCGGTTTCTTCAGCCCGCCAAACTCCACAAACCGATACGTTGGAATCTGGTACAACAAAATCTCCGAGCAAACGGTGGTGTGGGTCGCCAACAGAGACACTCCTCTCATCGACACTTCCGGTGTTCTCTCCATCAACACCCACGGAAACCTCGTACTCcaccacaacaccaccaacaccaaaaccaacaccCTTTGGTCCTCCAACGCTTCAATCGCATCCAGCAACGTTGCAGTTTCAGCCAAGCTTTTGGACACTGGAAATTTAGTTTTGATCCAAAACGACAACAACAGCATCGTCCTATGGCGGAGTTTCGATTACCCCAGCAACACCATGCTTCCTTTCATGAAACTCGGGGTGGACCGCAAAACCGGTCTGAACCGGTTTTTAATATCCTGGAAATCCGCGGATGACCCGGGAACCGGGAAGATGACATATAAAATCGACCCGACCGGGTTTCCACAACTGTTTCTTTACAAAGACAAGGTGCCGTTATGGCGGGTGGGGTCATGGACGGGTGAGAGATGGAGCGGGGTACCCGAGATGACTCCGAATTTCATTTTCAATATAAGCTTCGTGAACGACGAGGACGAGGTTTGGATAATGTACGGAGTTAAAGACCCGATGGTTTTCTCTAGAATGGTGCTGGAAGACACAGGTCACGTGAGGAGGACGACGTGGCAGGGTGAGGAGCGGAGGTGGTTTGAGATATGGAACGGGCCGAAGGAGGAGTGCGACAGCTTCAGACGGTGCGGGTCGAACTCGAACTGCGACCCGTACCAGGCGGAGAAGTTCGTGTGCGAGTGTTTCCCGGGGTTCGAGCCCAGGTCCGAGAGGGAGTGGTACCTGAGGGACGGGTCGGGTGGGTGCGTGCGGAAGAGGAACGTGTCCACGTGCGGGAGCGGGGAGGGCTTCGTGGGGGTGGCACGTGTGAAGGTGCCCGACACTTCGAAGGCGCGCGTGGCTCCGATGATGGGGATGCGTGAGTGCAGGGAGAGGTGCTTGAGGGATTGCACGTGTGCGGCTTACACGAGTGCGAATGAGAGCTCGGAGAGTGGGTGTCTTACTTGGCACGGTGACATGGAGGACACCAGGACATACACGCAAGTCGGACAAACATTGTACGTTCGTGTGGATGCGCTTGAATTAGCTAAATATGAAAAACATCCGTATGGTTCTCTAGGCAAGAAGGGAATGGTGGCAGTTTTATCCATTGCTACTTTCTTCATATTGTTTTTGGGGATTATTTTCGTGTATTGGTTTATAAAAGCCAGGAAACAAGGGATAAGAAGGGACCGCAAGTACTCCTTCCGTCTTAGCTTTGAGGACTCTACCGATCTACAAGAATTTGAATCTACAAAAAATTCAGATTTACCATTCTTTGATCTTAACTCCATAGCTGCTGCAACAGACAATTTCTCTGATGCTAACAAGCTTGGCCAAGGAGGTTTTGGTTCTGTTTATAAGGGTCTGTTGAGTAATGGATTGGAAATAGCAGTGAAGAGACTGTCAAAGTACTCTGGACAAGGCATAGAAGAGTTTAAAAATGAGGTTGTTTTGATCTCAAAGCTCCAACACAGAAATCTTGTGAGGATCTTAGGTTGCTGCATTCAAGGACAGGAGAAGATGTTAATCTATGAGTATTTGCCTAACAAAAGTTTGGACTCTTTAATTTTTGATGAAGCTAAAAGGTCTCAACTAGACTGGAGTAAACGATTTGATATCATCTGtgggattgctagagggatcttgtaccttcatcaagattcacgattgagaatcattcatagagacctaaaagccagcaatgtcttgctggactcttcattgaatcccaaaattgcagattttgggatggcaagaatatttggtggagaCCAAGTTGAAGCAAACACAAATCGTGTTGTTGGAACATATGGCTATATGTCACCAGAATATGCCATGGAAGGACAATTTTCGATAAAGTCTGATGTATACAGCTTCGGAGTTTTACTTCTAGAGATCATCACAGGCAGAAAGAATAGTGGTCAATACGAAGACATTACAGCCACAAATTTAGTTGGACATGTTAGTATTTTTGAGAACAATGGTCCATTTTAA 2256 0.4393 MKLFSFHKELLTPFFLLTFLYPSCHSLLHTITANHPIKDGDVLLSSDRGNFALGFFSPPNSTNRYVGIWYNKISEQTVVWVANRDTPLIDTSGVLSINTHGNLVLHHNTTNTKTNTLWSSNASIASSNVAVSAKLLDTGNLVLIQNDNNSIVLWRSFDYPSNTMLPFMKLGVDRKTGLNRFLISWKSADDPGTGKMTYKIDPTGFPQLFLYKDKVPLWRVGSWTGERWSGVPEMTPNFIFNISFVNDEDEVWIMYGVKDPMVFSRMVLEDTGHVRRTTWQGEERRWFEIWNGPKEECDSFRRCGSNSNCDPYQAEKFVCECFPGFEPRSEREWYLRDGSGGCVRKRNVSTCGSGEGFVGVARVKVPDTSKARVAPMMGMRECRERCLRDCTCAAYTSANESSESGCLTWHGDMEDTRTYTQVGQTLYVRVDALELAKYEKHPYGSLGKKGMVAVLSIATFFILFLGIIFVYWFIKARKQGIRRDRKYSFRLSFEDSTDLQEFESTKNSDLPFFDLNSIAAATDNFSDANKLGQGGFGSVYKGLLSNGLEIAVKRLSKYSGQGIEEFKNEVVLISKLQHRNLVRILGCCIQGQEKMLIYEYLPNKSLDSLIFDEAKRSQLDWSKRFDIICGIARGILYLHQDSRLRIIHRDLKASNVLLDSSLNPKIADFGMARIFGGDQVEANTNRVVGTYGYMSPEYAMEGQFSIKSDVYSFGVLLLEIITGRKNSGQYEDITATNLVGHVSIFENNGPF 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01350 751 PIRSF SRK 1 748 IPR024171 GO:0004674
Cca09g01350 751 Gene3D - 24 157 IPR036426 -
Cca09g01350 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Cca09g01350 751 Pfam Protein tyrosine and serine/threonine kinase 529 737 IPR001245 GO:0004672|GO:0006468
Cca09g01350 751 PANTHER - 10 742 - -
Cca09g01350 751 Pfam D-mannose binding lectin 77 186 IPR001480 -
Cca09g01350 751 SMART serkin_6 525 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01350 751 ProSiteProfiles Bulb-type lectin domain profile. 28 156 IPR001480 -
Cca09g01350 751 CDD PAN_AP_plant 349 430 - -
Cca09g01350 751 Pfam PAN-like domain 351 415 IPR003609 -
Cca09g01350 751 SUPERFAMILY Protein kinase-like (PK-like) 510 730 IPR011009 -
Cca09g01350 751 SMART blect_4 34 160 IPR001480 -
Cca09g01350 751 Pfam S-locus glycoprotein domain 218 328 IPR000858 GO:0048544
Cca09g01350 751 SMART ntp_6 352 430 IPR003609 -
Cca09g01350 751 ProSiteProfiles PAN/Apple domain profile. 351 431 IPR003609 -
Cca09g01350 751 Gene3D Phosphorylase Kinase; domain 1 487 600 - -
Cca09g01350 751 ProSitePatterns Protein kinases ATP-binding region signature. 531 553 IPR017441 GO:0005524
Cca09g01350 751 CDD B_lectin 34 160 IPR001480 -
Cca09g01350 751 Gene3D Transferase(Phosphotransferase) domain 1 601 749 - -
Cca09g01350 751 ProSiteProfiles Protein kinase domain profile. 525 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01350 751 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 191 IPR036426 -
Cca09g01350 751 PANTHER GLYCOPROTEIN S13, PUTATIVE-RELATED 10 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01350 Cca-Chr9 36525728 36539220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01350 450 751 Receptor kinase-like Gene Family AT4G23190 56.536 1.62e-109 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca09g01350 PK_Tyr_Ser-Thr 8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01350 - - gmx:100812814 1238.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01350 09 36525728 36539220 Cca08g02569 08 60043761 60055008 PCT