Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01346 ATGGGCATGATCACCACACGCAACAACCATGCAACTATTCTGCTCCTTTTATTCTTTTTCTTCTGTTTTCTCACTTTGTTATCCCATGCAGCCAATTCCATCACGGACAACATAATCAGAGACGATGATGATGGTGCTGACAATTTGGTGTCAGAAGATCTCAACTTCGAAATGGGTTTCTTCGGTTTTCATAACTCTTCAAGGTACGTTGGGATTTGGTACCACAAGGTTCCTATTCCAACATACGTGTGGGTTGCTAATAGAGACAAACCCATCAAAGGAAGAGGAGGTTCAATCAGAATCAAAAGTGACGGCAACTTGGTTGTCCTCGATGGAGAGAACGAGGTTTGGTCAAGTAACCTTAACCTGTCGAACTCGAATCCGGTGAACAACTCACAAGCTGTTCTACGTGACAATGGGAACCTTGTTCTTTCAAACAACGACAAAGATGTGTGGCAGAGCTTTGACCACCCTACTGATACGTATCTGCCAGGAATGGAACTGCCAGCTAGTGATAGAACGAGCATGAAACGTTCCTTCAGGTCATGGAAATCAGCGACGGATCCTTCACCGGGGAACTACACAATGGGGGTTGCTTCTGAGGGATCAACACCACAGATTTTGGTTTTGGAGGGAGAGAAAAGGAGGTGGAGAAGTGGGTATTGGGATCAAAGAGTGTTCACTGGTGTGTCCAATATGACAGGAAGCTCTCTATTTGGTTTTGGACTTAATACATACCCTAATGGAGAGAAGTACTTTGTATATACATGGAATGATGATACGGTGAGGTTTCAGATAAGTTGGGATGGGTTTGAAAGACGGCTGTTGTGGAATGAAGATGAGAAAAATTGGACACAGACACAATATGAGCCTTATAATGAGTGTGAGGAGTATAATTATTGTGGCAGTTTTGCAGTGTGCGATATGGCTAAATCACCTGTTTGTAGTTGCATGCAGAAGTTTAAGCCAAGGAATTGGGATGAGTGGAATAGTAGGAATTGGTCAAGGGGGTGTGAGAGGATGACTCTACTGAAGGCTGAGAGTGAGAGAGGTAATGGATCTGGAACTGAGGTTAGTGTTGGAGAAGATGGTTTCTTGAAGCTAAACAGTATGAAGTTGCCGGATTTCGCACAGTTGGTGGATGATACTGGTGATGAGGATTGCCAGAGGAATTGTCTGCAGAATAGTTCTTGTACCGCGTATTCATATACTCTTGGAATTGGGTGCATGGTTTGGTATGGGGATTTAGTTGATGTTCAATACTCTGAAAACTTTGGAACTGTACTCAACATCCGTCTTGCTGATTCTGATTTAGGCGATGGGGACAAAAGGACAAAAATTTGGATAATATTAGCCGTTGTGGTGGGGCTGATCTGCATTGGAATCGTTGTATGGCTGGTATGGAGGTTTAAGGCAAAACAAAAAGTTTCATCAGCTTCTGGATACAACAATAGCGACGTGCCAGTCTATGATCAAACGAGGAGTACAGACTTATCAGCAGAATTTTCAGAATCAACTGATTTAGGCTTGGATGGGAGTCAGCTAAGTGGAGCAGAACTTCCATTTTTCAATTTTAGCTACCTTGCACTAGCAACAAACAATTTCTCGGAAGAAAATAAGCTTGGACAAGGGGGATTTGGTCCTGTCTACAAGGGGAAGCTTCCAGGGGGAGAGCAAATAGCTGTCAAGAGGCTTTCAAGAAAATCTAGCCAAGGTTTAGAGGAGTTCAAGAATGAAATGATGCTGATAGCCAAACTACAACATAGAAATCTTGTTAGACTATTGGGATGTTCCATTCAAGGGGAAGAAATGATACTGGTATATGAGTACTTGCCAAACAAAAGCTTGGACTGCTTTTTATTTGATCCAGTGAAGCGAGAACAACTAGACTGGACAAGACGCTTTGAAATAATTGAGGGCATCGCAAGAGGGCTTCTTTATCTGCACCGGGATTCAAGACTTAGAATAATTCATCGCGATCTAAAAGCAAGTAACATTTTGTTGGATGAAAACATGAATCCAAAAATTTCAGACTTCGGCTTGGCCAGGATATTTGGCGGAAACCAAAATGAAGCCAACACAAACAGAGTGGTTGGTACATATGGTTATATGTCCCCAGAATATGCAATGGAAGGTTTATTTTCAGTTAAATCTGATGTCTACAGTTTTGGTGTATTGCTACTTGAGATTGTGAGTGGCCGCAGGAACACTAGCTTTCGCAACACAGATGAATCAAGTCTCATAGGATATGCCTGGCACCTTTGGAGTGAACAGAGAGTAATGGATCTTGTTGACCCTTCCATTCATGATTCAATTCCTAAGAGTAAAGCTTTGAGATGCATACACATAGGAATGTTATGCGTGCAAGATTCAGCTTCTCGTAGACCAAACATGTCCTCTGTGGTGTTGATGCTGGAAAGTGAAGCCACGGCTCTCCCTTTGCCTAAGCAACCTTTGCTTACTTCCATGAGGAAATATGATGATGGAGAATCTCATAGCGAAGGCCTTGATGTGTCAAATAATTTGACAGTCACAATGGTCACAGGGAGATGA 2553 0.4254 MGMITTRNNHATILLLLFFFFCFLTLLSHAANSITDNIIRDDDDGADNLVSEDLNFEMGFFGFHNSSRYVGIWYHKVPIPTYVWVANRDKPIKGRGGSIRIKSDGNLVVLDGENEVWSSNLNLSNSNPVNNSQAVLRDNGNLVLSNNDKDVWQSFDHPTDTYLPGMELPASDRTSMKRSFRSWKSATDPSPGNYTMGVASEGSTPQILVLEGEKRRWRSGYWDQRVFTGVSNMTGSSLFGFGLNTYPNGEKYFVYTWNDDTVRFQISWDGFERRLLWNEDEKNWTQTQYEPYNECEEYNYCGSFAVCDMAKSPVCSCMQKFKPRNWDEWNSRNWSRGCERMTLLKAESERGNGSGTEVSVGEDGFLKLNSMKLPDFAQLVDDTGDEDCQRNCLQNSSCTAYSYTLGIGCMVWYGDLVDVQYSENFGTVLNIRLADSDLGDGDKRTKIWIILAVVVGLICIGIVVWLVWRFKAKQKVSSASGYNNSDVPVYDQTRSTDLSAEFSESTDLGLDGSQLSGAELPFFNFSYLALATNNFSEENKLGQGGFGPVYKGKLPGGEQIAVKRLSRKSSQGLEEFKNEMMLIAKLQHRNLVRLLGCSIQGEEMILVYEYLPNKSLDCFLFDPVKREQLDWTRRFEIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDENMNPKISDFGLARIFGGNQNEANTNRVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEIVSGRRNTSFRNTDESSLIGYAWHLWSEQRVMDLVDPSIHDSIPKSKALRCIHIGMLCVQDSASRRPNMSSVVLMLESEATALPLPKQPLLTSMRKYDDGESHSEGLDVSNNLTVTMVTGR 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01346 850 ProSiteProfiles Protein kinase domain profile. 535 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01346 850 ProSiteProfiles Bulb-type lectin domain profile. 35 157 IPR001480 -
Cca09g01346 850 ProSiteProfiles PAN/Apple domain profile. 360 434 IPR003609 -
Cca09g01346 850 Gene3D - 42 156 IPR036426 -
Cca09g01346 850 Pfam S-locus glycoprotein domain 217 324 IPR000858 GO:0048544
Cca09g01346 850 Pfam D-mannose binding lectin 81 184 IPR001480 -
Cca09g01346 850 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 3 850 - -
Cca09g01346 850 SMART ntp_6 360 433 IPR003609 -
Cca09g01346 850 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 189 IPR036426 -
Cca09g01346 850 SMART blect_4 40 158 IPR001480 -
Cca09g01346 850 Gene3D Phosphorylase Kinase; domain 1 503 610 - -
Cca09g01346 850 Pfam Protein tyrosine and serine/threonine kinase 538 803 IPR001245 GO:0004672|GO:0006468
Cca09g01346 850 PIRSF SRK 6 850 IPR024171 GO:0004674
Cca09g01346 850 Pfam PAN-like domain 361 419 IPR003609 -
Cca09g01346 850 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 3 850 - -
Cca09g01346 850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 656 668 IPR008271 GO:0004672|GO:0006468
Cca09g01346 850 CDD STKc_IRAK 541 806 - -
Cca09g01346 850 SUPERFAMILY Protein kinase-like (PK-like) 520 825 IPR011009 -
Cca09g01346 850 SMART serkin_6 535 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01346 850 Gene3D Transferase(Phosphotransferase) domain 1 611 813 - -
Cca09g01346 850 CDD B_lectin 49 158 IPR001480 -
Cca09g01346 850 CDD PAN_AP_plant 362 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01346 Cca-Chr9 36492626 36496521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01346 509 818 Receptor kinase-like Gene Family AT4G23230 61.736 7.00e-132 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca09g01346 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01346 - - gmx:100786721 1277.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01346 09 36492626 36496521 Cca09g01346 09 36492626 36496521 ECH
Cca09g01346 09 36492626 36496521 Cca08g02568 08 60035923 60040054 PCT
Cca08g02566 08 60020584 60024119 Cca09g01346 09 36492626 36496521 PCT