Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01344 ATGACGTCACACTCACACTCACACTACCCATCCGATTTAGACGCCGACTCCGTCACCTCCTCCCCCCGCTCCGACACCTTCCACGAGGCGCCGCCGCGCCTCCGCTTCATGTGCAGCTTCGGCGGCAAGATCACCCCCCGCCCCAGCGACAACCAGCTCCGCTACGTCGGCGGCGACACCCGAATCGTGGCCGTCCACCGCTCCATCTCCTTCGCCGCCCTCATTCTCAAACTCTGCAAACTCTCAGGCATGACCAACATAACCGCCAAGTACCAGCTCCCGAACGAGGATCTGGACGCGTTGATCTCCGTAACGACTGACGAAGACGTGGAGAACATGATGGAGGAGTACGACCGCGTCGCACAGAATCAGAACCCGCGATCGGCGCGGCTTCGGCTCTTCCTCTTCGCCGAAGGGGAAGTCTCTCGAGCCAGCAGCATCAGCTCGCTCTTAAACGGCTCAGCAAAACGCGAGAACTGGTTCCTGGACGCGCTAAACGGCGGCGTTTCAGGCCTCGAGCGAGGCCGCTCCGAAGCCTCTTCCATGGTCTCGGAAGTACCCGATTACCTCTTCGGGTTAGACAACTCCGAAGACACACAACCACGACCCAAGGACCGACCCGTTGTTCTCCACGACAACGTTTCCATTTCGGATCCGGGTTCACCCGCCCCGGTTTCCTCTTCCCCTTATTGTTCCACGTCATCCCAACCCTGCGTGCCTTCTCTCCCGAACCTTCCCCCGGTTAAAACCAAACTCTCCAACCCGGTTCCCCATACTGATTCCAAGGAAATTCCAATTGaacctgaacccgagcctcatcccaacctcaacctcaaccccaacctaaacccctacccGCCTAACCCTATGGTTCACTACCCTCCCGAAGCTCCTTATTCGGGTCATTCAGTACAACCGGTTCCGGTTTTCTACGTTCCTGGTCCGGTTCAACCGGGAACTGTTCCGGTCCCCATGCAGACACCCTACCCCTACTCTCAACAACCATATCATGCAATGGTGCCATCCCATCCTCAGCTTCCATACGGGTACCATCATTTGGTTCCGGGTTCGGGTCAAGTATATGGTGCAGGCATGAGGCACGTCACCCCACTGCAACCGTATAGTCCTTCCGCCGCTGCCGCGGTTCAGGACGCTTTGAAACAGCATGTATATCACGCCGGTTCGGTTCCCATGATGGCGGTGACCGGTGGGGATGAACCGCAGAGAGGTGGAGCGGAGTTTGTGGCGGGTCGGGGCTCCAACTCGCTAAATAGCTGA 1278 0.5563 MTSHSHSHYPSDLDADSVTSSPRSDTFHEAPPRLRFMCSFGGKITPRPSDNQLRYVGGDTRIVAVHRSISFAALILKLCKLSGMTNITAKYQLPNEDLDALISVTTDEDVENMMEEYDRVAQNQNPRSARLRLFLFAEGEVSRASSISSLLNGSAKRENWFLDALNGGVSGLERGRSEASSMVSEVPDYLFGLDNSEDTQPRPKDRPVVLHDNVSISDPGSPAPVSSSPYCSTSSQPCVPSLPNLPPVKTKLSNPVPHTDSKEIPIEPEPEPHPNLNLNPNLNPYPPNPMVHYPPEAPYSGHSVQPVPVFYVPGPVQPGTVPVPMQTPYPYSQQPYHAMVPSHPQLPYGYHHLVPGSGQVYGAGMRHVTPLQPYSPSAAAAVQDALKQHVYHAGSVPMMAVTGGDEPQRGGAEFVAGRGSNSLNS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01344 425 PANTHER OS05G0427100 PROTEIN-RELATED 7 418 - -
Cca09g01344 425 MobiDBLite consensus disorder prediction 193 273 - -
Cca09g01344 425 MobiDBLite consensus disorder prediction 404 425 - -
Cca09g01344 425 CDD PB1_UP2 37 136 - -
Cca09g01344 425 MobiDBLite consensus disorder prediction 1 26 - -
Cca09g01344 425 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P 7 418 - -
Cca09g01344 425 SUPERFAMILY CAD & PB1 domains 49 143 - -
Cca09g01344 425 Gene3D - 54 138 - -
Cca09g01344 425 SMART PB1_new 48 136 IPR000270 GO:0005515
Cca09g01344 425 MobiDBLite consensus disorder prediction 219 239 - -
Cca09g01344 425 Pfam PB1 domain 50 136 IPR000270 GO:0005515
Cca09g01344 425 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01344 Cca-Chr9 36475094 36476450 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01344 23 173 MAP Kinase Kinase Kinase AT3G46920 41.830 8.35e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01344 - - aprc:113858359 616.69