Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01343 ATGGCGAAGAGACCCAAGGAGGAGGAAGCGCAGGAGCCTCTGCCGGACCATCTCCGCTGCGGCCGCACCGACGGGCGCCAATGGCGGTGCCGGCGGCGAGTGAAGGACAGTCTGAAGCTCTGCGAGATTCACTACCTCCAAGGTCGCCATCGCCAGTTCAAGGAGAAGGTTCCCGAGTCCCTGAAGCTTCACCGGAAGAGAAAACCGAGCGAGGAGCCTAACGCTCTCGACAATGCCGAATCTAGGGTACGGAGAACCTCGAGAATCGTGAAGAAGAAGCGCAAGCTTTCCGAGGGTTCCGACGCGTTGGTCGTTGCCGCTTCCTCCGCCGCCAGGAAGAAGAAGGAGTTGAAGCAAGGCGATGTGCAGTTGGAGCTTTTGAGGATGGTTCTCaagagagaagctgagaagaagaacaaaagcaagagcaagaagaagaagaagaagaaggttaagaagaagaaaaaggaagaggaagaggaaTTGTGCTACGGTGAAGGAGAGCTGAGGAGGGAATTGCCCAATGGTGTAATGGAAATCTCTCCGGCTTCGCCGAATCGTGATTACAACAATGTGGGTTCTCATTGTGATGTTAAAGTGGGTGTTGATTGCAGAACTGTTACTCCTCGTTACTTTAGGTCCAAGAATGTTGATAGGGTCCCTGTGGGGAAGTTGCAGATTGTGCCGTACGGGTCAAATTTGACCAAGGGTCAGGGTAAGAGGAAGAAGTGCCATTGGTGTCAGAGAAGTGAGTCTGGTAACCTCATCCAGTGTTCGAGCTGTCAGAGGGAGTTTTTCTGCATGAACTGCATTATAGAGCGGTATTGTGACACTCAAAATGAAGTTAAGAAGGCATGTCCAGTTTGTCGCGGAACTTGCACTTGTAAGGTCTGCTCAGCAAGTCAATGTAAAGACAGTGAAAGTAAGGAATATTTGACTGGAAAAAGCAGAGTTGATAGAATACTGCATTTTCATTATTTGATCTGCATGCTTCTTCCAGTACTAAAGCAAATAAGTGAAGATCAGAATATTGAGCTAGAAACAGAAGCAAAAATTAAAGGGAAAAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGCTGCAATGAGAATAGTTGTTGCAATCACTGCAAAACACCCATTTTGGATCTCCATAGAAGCTGTCCTGGTTGTTCATATAAGCTATGCTTAAGTTGTTGTCAGGAGTTAAGTAAAGGAAAAACTTCTGGAGAAATTAACTCATCTATGTTCAAGCAACCTGATAAAATGAAAGCTTGTGATGCTAGTGAGAGCCATACTTTGGGTGACAAAGCCATATCTAGTGGCAATTTAACTGATACTTCAATATTGCCTGAGTGGACAAATTGTAATGACATTGATAGTTTATCATGCCCTCCTACAGAGCTTGGTGGTTGTGGTAATTGTCACCTTGATTTGAGATCTGTTTTCACCTCTAGTTGGATCAAAGAGATGGAAGTAAAGGCGGAAGAAATTGTTTGCAGCTATGACTTCCCTGAAACTTCAGATAAAAGTTCGAGCTGCTCATTGTGTTTTGACACTGATCACAGCACTAACAGATACAAACAGTTACATGAAGCAGCTCTAAGAGAAGATTCCAATGATAATTACTTGTTTTGTCCCACGGTGTTGGACATTAGTGGTGATAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGCCATCCTATAGTTGTCCAAGATGTGCTCCAAAATACATCAAACCTCAATTGGGATCCAGTAATAATGTTCTGTACTTATCTTGAGCAGAGCATTACAAGATATGAGAATAATAAAGATTTACTTGCATCTTGTTTGGACTGGTGGGAGGTGGATATTAACATTAGGCAGTTTTTTACTGGGTCTGTGAAACGTCGTCCTCAGAGAAACACTTGGCATGAGATGCTGAAACTAAATGGGTGGCTGTCTTCCCAAATATTCAAAGAGCAGTTTCCAGCTCATTTTGCTGAGGTAATTGATGCCCTACCAGTTCAAGAATACATGCACCCGTTGTCTGGTCCTCTGAATTTAGTGGCAAATTTGCCACATGGGAGTGCAAAACATGATATTGGCCCATATGTCTATATATCTTATGGCTCTGCTGACAAAGAAACTGATTCTGTTACAAAACTCTGCTATGACTCGTATGATGTGGTTAATATTATGACACATGCCACGGATGTCCCCCTCTCTACAGAACAGCTTACAAAAATAAGAAAGTTACTGAAAAAGCACAAAACTCTCTGTCAAATGGAGACTATTGCTACTGTGGAGATACAGGAACAGAAAGTGAATGGAATGACATTATTGGATGCTGAAAAAATGGAGCAAAAAGACTTGCAGAGTATGGTTGATGAAGGATCAAACTTTTTCAGGAGAGTCAATAGAACATCTTGCATCTCAACTGAAGCAAAAAACGTTTCTAGTCAGAGCAAAAACAGCAATATTTCCCAGAATGGAGAATGTGATGTTTCTGATTCTGATTCTGGACCTGCCTTACTTCTCCATGGGACAGTTCAAACTACTGCATTGTCTAATCACGACAATCCTAGATATCCCTTTGAAAGATCACAAAGAAATAAAAATAAGTTTACTGAGCAATCTGGTGCCCAGTGGGATGTCTTTCGTAGACAAGATGTACCAAAACTCATAGAGTACCTTCAAAGGCACTATGATGAATTTTCTTATACCAATGACTATTACAAGAAACAGATGGTTCATCCAATTCTAGATCAGAGCATCTTCCTTGACAGTACTCACAAAATGAGACTAAAGGAGGAATTTAAGATTGAACCATGGAGTTTTCAGCAACACGTTGGACAAGCTGTCATCATTCCTGCCGGATGTGCATATCAGATCAGAAATTCTAAGTCTTGTGTTCATGCGGTATTGGAATTTGTGTCCCCTGAAAATGTTACCGAGGGTATCCAGTTGATTGATGAGGTTCGACTATTGCCTGAAAACCATAAAGCGAAAGCAGACGTGCTGGAGGTAAAGAAAATGGCGCTTCATAGCATGAATACAGCAATTAAAGAAGTACGTCACCTTACAAGCAAAACATGA 3084 0.4125 MAKRPKEEEAQEPLPDHLRCGRTDGRQWRCRRRVKDSLKLCEIHYLQGRHRQFKEKVPESLKLHRKRKPSEEPNALDNAESRVRRTSRIVKKKRKLSEGSDALVVAASSAARKKKELKQGDVQLELLRMVLKREAEKKNKSKSKKKKKKKVKKKKKEEEEELCYGEGELRRELPNGVMEISPASPNRDYNNVGSHCDVKVGVDCRTVTPRYFRSKNVDRVPVGKLQIVPYGSNLTKGQGKRKKCHWCQRSESGNLIQCSSCQREFFCMNCIIERYCDTQNEVKKACPVCRGTCTCKVCSASQCKDSESKEYLTGKSRVDRILHFHYLICMLLPVLKQISEDQNIELETEAKIKGKNISDIQIKQVEFGCNENSCCNHCKTPILDLHRSCPGCSYKLCLSCCQELSKGKTSGEINSSMFKQPDKMKACDASESHTLGDKAISSGNLTDTSILPEWTNCNDIDSLSCPPTELGGCGNCHLDLRSVFTSSWIKEMEVKAEEIVCSYDFPETSDKSSSCSLCFDTDHSTNRYKQLHEAALREDSNDNYLFCPTVLDISGDNFEHFQKHWGKGHPIVVQDVLQNTSNLNWDPVIMFCTYLEQSITRYENNKDLLASCLDWWEVDINIRQFFTGSVKRRPQRNTWHEMLKLNGWLSSQIFKEQFPAHFAEVIDALPVQEYMHPLSGPLNLVANLPHGSAKHDIGPYVYISYGSADKETDSVTKLCYDSYDVVNIMTHATDVPLSTEQLTKIRKLLKKHKTLCQMETIATVEIQEQKVNGMTLLDAEKMEQKDLQSMVDEGSNFFRRVNRTSCISTEAKNVSSQSKNSNISQNGECDVSDSDSGPALLLHGTVQTTALSNHDNPRYPFERSQRNKNKFTEQSGAQWDVFRRQDVPKLIEYLQRHYDEFSYTNDYYKKQMVHPILDQSIFLDSTHKMRLKEEFKIEPWSFQQHVGQAVIIPAGCAYQIRNSKSCVHAVLEFVSPENVTEGIQLIDEVRLLPENHKAKADVLEVKKMALHSMNTAIKEVRHLTSKT 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01343 1027 Coils Coil 132 161 - -
Cca09g01343 1027 MobiDBLite consensus disorder prediction 850 872 - -
Cca09g01343 1027 Pfam WRC 15 56 IPR014977 -
Cca09g01343 1027 SUPERFAMILY Clavaminate synthase-like 557 1013 - -
Cca09g01343 1027 MobiDBLite consensus disorder prediction 138 153 - -
Cca09g01343 1027 SMART cupin_9 658 990 IPR003347 -
Cca09g01343 1027 MobiDBLite consensus disorder prediction 811 832 - -
Cca09g01343 1027 MobiDBLite consensus disorder prediction 53 85 - -
Cca09g01343 1027 MobiDBLite consensus disorder prediction 53 100 - -
Cca09g01343 1027 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Cca09g01343 1027 MobiDBLite consensus disorder prediction 811 835 - -
Cca09g01343 1027 Pfam JmjC domain, hydroxylase 875 968 IPR003347 -
Cca09g01343 1027 ProSiteProfiles JmjC domain profile. 677 990 IPR003347 -
Cca09g01343 1027 Gene3D Cupin 549 999 - -
Cca09g01343 1027 PANTHER PROTEIN B160 11 1026 - -
Cca09g01343 1027 ProSiteProfiles Zinc finger RING-type profile. 244 290 IPR001841 -
Cca09g01343 1027 MobiDBLite consensus disorder prediction 1 22 - -
Cca09g01343 1027 MobiDBLite consensus disorder prediction 135 157 - -
Cca09g01343 1027 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 11 1026 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01343 Cca-Chr9 36450753 36457794 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Cca09g01343 JmjC 1.3e-08 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01343 K15601 - gmx:100810673 1690.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01343 09 36450753 36457794 Cca08g02550 08 59848710 59854718 PCT