Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01340 ATGGGGAGATCACCTTGTTGTGACAAAAATGGCCTCAAGAAAGGACCCTGGACACCAGAGGAAGACCATAAACTCATCGATTACATTCAGAAACATGGCTACGGCAATTGGAGAATACTCCCAAAGAATGCTGGGTTGCAAAGGTGTGGAAAGAGTTGCAGACTTCGTTGGACAAACTATCTCCGACCAGACATAAAGCGAGGTCGGTTCAGTTTTGAAGAGGAGGAGGCTATAATACAGCTACATAGCATTCTTGGGAACAAGTGGTCAGCTATTGCTTCTCGCTTGCCCGGAAGAACAGACAATGAAATCAAGAATTACTGGAATACACACATTAGAAAAAGGCTTCTAAGGATGGGAGTTGATCCTGTGACACATAGGCCAAGGCTTGATCTATTGGACCTCTCTTCCATCCTAAGTTCATCCTTCTATGGTTCAAGTTCCACACAAATGAACATGCAAAGACTATTTGGCACACACACACTGGTGAACCCCCAGCTTCTAAAGTTGGCCTCGTCACTCTTTTCCTCTCACCAAGGTGAACACCTCAACATGTGTGCACAAAACGGTGAAGAGAATCAGCTTTGTGATCCACAAACTCAGAACCAAATCCCACACTTGGTACAGAATCAGGACTTGACTCAAGAAGCATGTGAAACAGCTTGCAGCACGATGAATATTCCCCCTTGTGTTTCGTTGCCTTTCACTCAATCACAGTTGGCTGAACTTGAATCCAATATGAACCCATACCATTCAATTTTCCATGACTCTGGCTTTCAACAACAGTCTCAGATAAGTGATTGGCATTGCAATGGAATTGATTTAAGTAGTGTGACAAAGACAGAGAGTTATGTTCCTCAATTACCAAGCTACAATTACCCCGCCTCTGATTATAATGCAAATCTTATGGACCCTCCAATGTCATTCCCTTCGGTTCTCTCAACGCCTTCGTCGAGTCCCACACCGTTGAACTCGAACTCGACTTATGCGAATGGGTGCAGTGGCACTGAGGACGAGACAGAAAGCTATGTCAGCAGCAATTTGTTGAGATTTGAAATCCCAGATATGTTAGGTGTGAATGAGTTCATATAA 1092 0.4396 MGRSPCCDKNGLKKGPWTPEEDHKLIDYIQKHGYGNWRILPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEEAIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGVDPVTHRPRLDLLDLSSILSSSFYGSSSTQMNMQRLFGTHTLVNPQLLKLASSLFSSHQGEHLNMCAQNGEENQLCDPQTQNQIPHLVQNQDLTQEACETACSTMNIPPCVSLPFTQSQLAELESNMNPYHSIFHDSGFQQQSQISDWHCNGIDLSSVTKTESYVPQLPSYNYPASDYNANLMDPPMSFPSVLSTPSSSPTPLNSNSTYANGCSGTEDETESYVSSNLLRFEIPDMLGVNEFI 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01340 363 MobiDBLite consensus disorder prediction 311 338 - -
Cca09g01340 363 CDD SANT 69 112 IPR001005 -
Cca09g01340 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 358 - -
Cca09g01340 363 CDD SANT 16 61 IPR001005 -
Cca09g01340 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca09g01340 363 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca09g01340 363 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca09g01340 363 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Cca09g01340 363 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca09g01340 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca09g01340 363 PANTHER TRANSCRIPTION FACTOR MYB41 1 358 - -
Cca09g01340 363 Gene3D - 69 116 - -
Cca09g01340 363 Gene3D - 13 66 - -
Cca09g01340 363 SMART sant 66 114 IPR001005 -
Cca09g01340 363 SMART sant 13 63 IPR001005 -
Cca09g01340 363 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01340 Cca-Chr9 36426865 36428479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01340 1 363 MYB Transcription Factor Family AT4G21440 54.155 7.86e-119 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca09g01340 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01340 K09422 - gmx:100810143 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01340 09 36426865 36428479 Cca09g01340 09 36426865 36428479 ECH
Cca09g01340 09 36426865 36428479 Cca08g02548 08 59820060 59821725 PCT