Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01333 ATGGGTGGTGAAGAAGAGTTCGCCGGAGCTTCGGGTCTCCGGCGAGCGGTGGAGCTCATACGCGCGGTGCTATCTCTGTCCCTCTCGATTCGCGTCTTCGCCGGAAAATGGCAGCTCATTCGCGCCAAGCTGGAGGAGCTTCACGGCGGTTTTATCGCCGCCGAGAGCTGCGACTCAGGCGAGAACACGTCGGTTTCGCGGCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGGCGGCGGCGGCGACCACCGTGGAGGAGTGCCACGATCTGTGCCGGCGCTGCGTGGACGTGTCCTACAGCGGGAAGCTTCTGATGCAGAGCGATTTGGACGTGGCGTTCGCGAAGCTCGATGCGCACGCGAAGAGGCTCTCGGAGATATACAAAACGGGTATTCTGACAAATGGGTATGCGCTCGTGGTGTCAAAACCGAGTCTTGGCGCTTCGAGAGAGGATATGAGGTTCTACGTGAGGGACTTAACGACGAGGATGAAGATTGGGGATTTGGGTATGAAACGACAAGCTTTGCGGAACATTCTAGAAGTTGTGTTGGAGGATGAGAAGTACGTGAAGGTGATTGTGGATGTGGGTGACGTGGTTCATTTGTTAGTGGGGTTTTTGGGGTCTAGTGAGGTGGAGATTCAGGAAGAGAGTGCTAAGGTGGTTTCTGTGGTTGCAGGGTTTGATTCTTACAAAGGGGTTTTGGTCACTGCGGGGGTGATTGCGCCGTTGGTTAAGGTTTTGGATTGTGGGAGTGAGATGGGGAAGGTTGCGTCCGCAACGTGTTTGATGAAGTTGACTGAGAATTCGGATAATGCTTGGTGCGTTTCGGCTCATGGGGGGGTTAGTGTGTTGTTGAAGATTTGTGGTGGTGCTGACTCTGGTGGTGATTTGGTTGGGCCTGCTTGTGGGGTGTTGAGGAATCTCGTTGGTGTTGAGGAGATTAAGAGGTTCATGGTTGATGAGGGTGCTGTGGTGACGTTCATTAGGCTTGTGAGGTCCAAGGAGGAAGCGATTCAGGTGAATTCGATAGGGTTTCTTTTGAGTATTTCCTCTGGGGATGAGTTGGTTAGGCAGATGGTGGTTAGAGAGGGTGGAGTCCGTGCCTTGTTGCGTGTTTTGGATCCTAAGTGGTCTTATTCTTGTAAAACCAGGGAGGTGGCAATGAGGGCTGTTGAGGATTTGTGTTTTTCCTCACCTAGTTCTGTGGCTGTTTTGATGAGTTATGGCTTTGTGGATCAATTGATATATTATGTTCGAAACGGCGAGGTTTCGATCCAGGAGTTGGCCTTGAAGGTGGCTTATAGGTTGTGTGGAACATCCGAGGAGGCTAAGAAAGCATTGGGGGATGCAGGGTTCATGCCAGAGTTTGTCAAGTTTCTTAATGCAAAGTCATTTGAAGTTCGAGAAATGGCAGCTGAGGCACTCTCCGGCATGGTTATGGTTCCAAGAAACAGAAAGAGGTTTGTGCAGGATGACCATAATATAGCCCTTCTTCTGCAGTTGCTTGATCCAGAGGAGGGGAATTCAGGTAATAAAAAGTTCTTAATCTCTATATTAATGTCCTTAACGAGTTGCAACAGTGGGAGGAAAAAGATTGTTGGTTCCGGATATGCCAAGAACATAGAAAAACTTGCGGAGGCTGAGGTTTCTTCTGATGCCAAGAAACTCGCCAAGAAGCTATCCACAAGCCGGTTCCGCAGTATGTTGAGTGGAATCTGGCACTCGTGA 1881 0.4588 MGGEEEFAGASGLRRAVELIRAVLSLSLSIRVFAGKWQLIRAKLEELHGGFIAAESCDSGENTSVSRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAATTVEECHDLCRRCVDVSYSGKLLMQSDLDVAFAKLDAHAKRLSEIYKTGILTNGYALVVSKPSLGASREDMRFYVRDLTTRMKIGDLGMKRQALRNILEVVLEDEKYVKVIVDVGDVVHLLVGFLGSSEVEIQEESAKVVSVVAGFDSYKGVLVTAGVIAPLVKVLDCGSEMGKVASATCLMKLTENSDNAWCVSAHGGVSVLLKICGGADSGGDLVGPACGVLRNLVGVEEIKRFMVDEGAVVTFIRLVRSKEEAIQVNSIGFLLSISSGDELVRQMVVREGGVRALLRVLDPKWSYSCKTREVAMRAVEDLCFSSPSSVAVLMSYGFVDQLIYYVRNGEVSIQELALKVAYRLCGTSEEAKKALGDAGFMPEFVKFLNAKSFEVREMAAEALSGMVMVPRNRKRFVQDDHNIALLLQLLDPEEGNSGNKKFLISILMSLTSCNSGRKKIVGSGYAKNIEKLAEAEVSSDAKKLAKKLSTSRFRSMLSGIWHS 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01333 626 SUPERFAMILY ARM repeat 212 610 IPR016024 -
Cca09g01333 626 Gene3D - 206 615 IPR011989 -
Cca09g01333 626 Coils Coil 65 68 - -
Cca09g01333 626 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 330 374 IPR000225 GO:0005515
Cca09g01333 626 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 130 626 - -
Cca09g01333 626 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 6 67 - -
Cca09g01333 626 Pfam Armadillo/beta-catenin-like repeat 492 527 IPR000225 GO:0005515
Cca09g01333 626 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 130 626 - -
Cca09g01333 626 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 6 67 - -
Cca09g01333 626 SMART arm_5 362 402 IPR000225 GO:0005515
Cca09g01333 626 SMART arm_5 491 531 IPR000225 GO:0005515
Cca09g01333 626 SMART arm_5 319 361 IPR000225 GO:0005515
Cca09g01333 626 SMART arm_5 404 447 IPR000225 GO:0005515
Cca09g01333 626 SMART arm_5 236 277 IPR000225 GO:0005515
Cca09g01333 626 SMART arm_5 278 318 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01333 Cca-Chr9 36221928 36224072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01333 159 483 U-box Gene Family AT3G54790 23.313 3.41e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01333 - - gmx:100809382 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01333 09 36221928 36224072 Cca08g02542 08 59783130 59784989 PCT