Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01331 ATGCGGAGTTTCACTTTCTTCGAACGAGTTTCTAGAGCTTTCCGTGATCATGGCTCTAACTTCAAGCTTGTTCTCCTCTGCACCACCGTTAGTGGTGGAGGGGTTCTGGCTTACGGAGAGGCTGTTGGTGCATCTGAAGCGGCGGTGACGGAGAAGAAAAAGGTGGTGGTGCTGGGAACAGGGTGGGCTGGCACGAGTTTCTTGAAGAATCTCGACAATCCCAGATATGAGGTTCACGTTGTCTCGCCCCGCAATTACTTTGCATTCACTCCTTTGCTGCCTAGTGTTACCTGCGGCACCGTCGAAGCTCGCAGCATTGTCGAACCCGTCCGCAATATTTTCAGGAAGAAAAAGGTGGACGTTCAATTCAGTGAAGCAGAATGTCTCAAGATTGACGCAGCAAACAGGAAGGTTTACTGTCGTTCTAGTATAAATAATAATTTGAACGATAAAGAAGAATTTGTGGTGGACTATGACTACTTAATCATAGCCGTGGGAGCTAATGTCAACACATTTAATACTCCAGGAGTGACGGAGAATTGCCATTTCTTGAAGGAAGTTGAAGATGCACAGAAGATTAGAAGAACTGTTATTGACTGCTTTGAGAGAGCAAGTTTGCCTAGTGTAAGTGAGGAAGAAAGGAAGAGAATTCTTCATTTTGCTATTGTTGGAGGTGGTCCAACTGGAGTGGAATTTGCAGCCTCACTACATGACTTTGTCACAGAGGATTTGGTTAATTTATATCCTGGTATAAAAGATTTAGTTAAAATTACACTTCTGGAGGCTGGAGATCATATTTTGGGCATGTTTGACAAAAGAATCACTGCGTTTGCTGAAGATAAGTTCCGAAGAGATGGTATTGATGTGAAAACAGGATCCATGGTTGTGAAGGTATCTGATAAAGAAATTTCTACTAAAGAAATGAAAAATGGAGGAGAAATTACTACAATTCCATATGGAATGGCCGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATAAGAGATTTTATGTCACAAATTGGTCAGACTAACAGACGCGCCATAGCTACTGATGAATGGTTGAGAGTTGAAGCAACTAACAATGTGTATGCACTTGGTGATTGTGCTACAATAAACCAGCGAAAAGTCATGGAAGATATCGCCGCAATATTTAAGAAGGCTGACACTGACAATTCAGGGACTCTTACTGTCAAAGAATTTCAGGAGGTGTTGGCTGACATCTGTGAGAGATACCCTCAGGTGGAGCTATATCTAAAGAGTAAACAAATGCACGACCTTGCTGATTTGCTGACAGAGTCCAAGGGAGATGTTAAAAAAGAATCCGTTGAACTCAACATCGAAGAACTCAAAACCGCACTCTCTAAAGTGGATTCTCAGATGAAATTTCTTCCTGCTACAGCGCAGGTTGCATCTCAGCAAGGCACCTACCTGGCCAAGTGCTTTAACCGGATGGAAGAGTGTGAAAAAAATCCAGAGGGTCCAATCAGGTTCAGGGGAGAAGGGCGCCATCGCTTCAAACCCTTTAGGTACAAGCATTTGGGTCAATTTGCTCCTCTAGGAGGAGAGCAAACAGCTGCACAGCTTCCTGGGGATTGGGTTTCAATTGGACACAGTTCACAATGGCTGTGGTATTCTGTCTATGCAAGCAAGCAAGTCAGCTGGCGCACAAGGGCATTAGTAGTATCAGACTGGACAAGACGCTTTATTTTTGGGAGGGACTCCAGTCAAATATGA 1737 0.4381 MRSFTFFERVSRAFRDHGSNFKLVLLCTTVSGGGVLAYGEAVGASEAAVTEKKKVVVLGTGWAGTSFLKNLDNPRYEVHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFRKKKVDVQFSEAECLKIDAANRKVYCRSSINNNLNDKEEFVVDYDYLIIAVGANVNTFNTPGVTENCHFLKEVEDAQKIRRTVIDCFERASLPSVSEEERKRILHFAIVGGGPTGVEFAASLHDFVTEDLVNLYPGIKDLVKITLLEAGDHILGMFDKRITAFAEDKFRRDGIDVKTGSMVVKVSDKEISTKEMKNGGEITTIPYGMAVWSTGIGTRPFIRDFMSQIGQTNRRAIATDEWLRVEATNNVYALGDCATINQRKVMEDIAAIFKKADTDNSGTLTVKEFQEVLADICERYPQVELYLKSKQMHDLADLLTESKGDVKKESVELNIEELKTALSKVDSQMKFLPATAQVASQQGTYLAKCFNRMEECEKNPEGPIRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWTRRFIFGRDSSQI 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01331 578 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Cca09g01331 578 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Cca09g01331 578 SUPERFAMILY FAD/NAD(P)-binding domain 52 271 IPR036188 -
Cca09g01331 578 SUPERFAMILY EF-hand 330 465 IPR011992 -
Cca09g01331 578 PANTHER NAD(P)H DEHYDROGENASE B2 3 578 - -
Cca09g01331 578 SMART efh_1 380 408 IPR002048 GO:0005509
Cca09g01331 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 28 47 - -
Cca09g01331 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 158 176 - -
Cca09g01331 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Cca09g01331 578 Coils Coil 440 460 - -
Cca09g01331 578 PANTHER NADH DEHYDROGENASE 3 578 IPR045024 GO:0003954|GO:0006116
Cca09g01331 578 SUPERFAMILY FAD/NAD(P)-binding domain 219 373 IPR036188 -
Cca09g01331 578 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 378 IPR023753 GO:0016491
Cca09g01331 578 Gene3D - 44 403 - -
Cca09g01331 578 Gene3D - 422 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01331 Cca-Chr9 36124728 36130285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01331 1 578 EF-hand Containing Proteins AT4G05020 70.465 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01331 K03885 - gmx:100800518 1094.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01331 09 36124728 36130285 Cca08g02541 08 59764629 59771386 PCT