Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01314 aTGAACGACTTATTCTCAAACTCGTTCAAGAAATACAGCGACCTGAAGGAACAAGCATACCTGGATGACGTGGAGGCCGGGAAGGAAAGCGTGAACCTAGACAAATTCTTCGAGGACGTCGAGGATGTTAAGGAGGACATGCGGAGCGTGGAGAAGCTCTACAGAAAGCTTCAAGAAGCAAACGAAGAGAGCAAGATCGTGCACAACGCCAAAACCATGAAGGACCTTCGAGCCAGAATGGACAAGGACGTCGAGCAGGTTCTGAAGCGTGTCAAGCTCATCAAAGGCAAGCTAGAGGCGCTGGAGCGGTCCAACGCGGCCAACCGGAGCCTCCCCGGTTGCGGAGCCGGTTCCTCAGCGGACCGGACGCGGACCTCGGTGGTGTCGGGGATGGGGAAGAAGCTGAAGGACATGATGGACGACTTCCAGGGGCTGCGGGCGCGGATGCAGATGGAGTACAAGGAGACGGTGGAGCGCCGCTACTTCACCGTCACGGGGGAGAAGCCCGACGAGGACACCATCGAGAACCTCATTTCGAGTGGCGAGAGCGAGAGCTTCCTGCAGAGGGCGATTCAGGAGCAGGGTCGAGGGCAGATTATGGACACCATTTCGGAGATTCAGGAGCGGCACGACGCCGTGAAGGAGATTGAGAAGAACTTGATTGAGCTGCACCAGGTGTTCTTGGACATGGCGGCGCTGGTGGAGTCGCAGGGGCAGCAGTTGAACAACATCGAGAGCCACGTGGCGCATGCCAGCTCCTTTGTCCGACGTGGCACGGAGCAGCTCCAGGATGCGAGGGAGTATCAGAAGGGGTCCAGGAAGTGGACTTGCTATGCTGTTATTCTCGGCATTGTGCTCCTTGTTGTGCTCTTGTTCCCTCTCTTGAGCTCGCTCTTGCCTCATTTGTTGATGAGGTGA 918 0.5675 MNDLFSNSFKKYSDLKEQAYLDDVEAGKESVNLDKFFEDVEDVKEDMRSVEKLYRKLQEANEESKIVHNAKTMKDLRARMDKDVEQVLKRVKLIKGKLEALERSNAANRSLPGCGAGSSADRTRTSVVSGMGKKLKDMMDDFQGLRARMQMEYKETVERRYFTVTGEKPDEDTIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLQDAREYQKGSRKWTCYAVILGIVLLVVLLFPLLSSLLPHLLMR 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01314 305 Gene3D - 194 295 - -
Cca09g01314 305 Coils Coil 40 70 - -
Cca09g01314 305 Coils Coil 84 104 - -
Cca09g01314 305 CDD SynN 33 190 IPR006011 GO:0016020
Cca09g01314 305 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Cca09g01314 305 Gene3D - 33 160 - -
Cca09g01314 305 PANTHER SYNTAXIN-124-RELATED 6 295 - -
Cca09g01314 305 PANTHER SYNTAXIN 6 295 IPR045242 -
Cca09g01314 305 Pfam SNARE domain 240 291 IPR000727 -
Cca09g01314 305 CDD SNARE_syntaxin1-like 202 263 - -
Cca09g01314 305 SMART tSNARE_6 198 265 IPR000727 -
Cca09g01314 305 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cca09g01314 305 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Cca09g01314 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Cca09g01314 305 SMART SynN_4 28 154 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01314 Cca-Chr9 35868755 35869672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01314 1 304 SNARE and Associated Proteins AT1G61290 76.645 7.64e-179 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01314 K08486 - gmx:100818999 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01314 09 35868755 35869672 Cca08g02535 08 59673095 59674192 PCT