LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g01305	ATGGGAGTGATAACGTGGAGCACCTGGGAGGAGCTTCTCCTTGGTGGAGCTGTTCTCAGGCACGGAATCCAAGATTGGACCGTCGTCGCGGCGGAACTCAAAACCCGAACCCTTTCGCCATGCAATTTCACACCCGAGGTCTGTAAAGCCAAATATGAAGAGTTGCGAGAGCAGTATTCCGGGTGCACGGATTTGTTTGAGGAGCTTAGGAAGAAAAGAATGGCAGAGCTTAAGAAAGATTTGGAGCAATCTGAAGGTTTAATTGGGTCCCTTGAATCGAAGCTTGAATCCCTTGAGGCTGAGGGGAATGAGAAAACCGGTGATTGCCGCGTCAACGATGGTTCAGCTGAACAAGAATTACAAGTTCCATCTCAGAGATTGGATAGAGCCAAATCTTCTGCAAAAGAGGTGTCAAAGGATGCCGGGAGTTTCACACATGAAACTGAGACAAACTGGTCTCATGGCAACCTGGTTCCAACAATGTCTTGTGAAGAAATGGAGACCAAGCCTCAAGTTTCAGGGTCTACCGAGCAGGAGAAAGTTTTGAATGTAGATAAGCCTGCTCACACTGTATATGAAGGACAGGAAGATGGTCTGAAAAAATGGAGTGGGAAGAGAAAGAGGAAGGATTATGGAAGGAATTTTAATGAAGTGAGTGTAAAAGAAAGTGATCTTTCAGCTGATGTGTGTAAAGAAAGTTCTATCAGCAATTGTGGTGAGATTGTCAAACCTTCTGGTATGAATAAGGAGAATGAAAACTTGAAAAAGGATGGAATAATGGATTTGATGGAGATCTTAGATTCTGTTATGGTGGTTAGAGGTTCTTCTGCCTTCTGTCGTAGACTTGATAGCCAGAAGCGAGGAAGATACAAGAGAATGATCCGGCAGCACATGGACTTTGACACTATAAGGTCAAGAATAAGCAACCAAACAATCAAGTCAGTGATGGAACTTTTCAGAGACTTACTACTACTGACCAACAATGCCATATCATTCTACTCCAAGATCACTCGTGAGTACAAAACTGCTATACAAATTAGAGACCTTGTCATCAAAGCATCGAGGGAGAAACTCAAGTGTTTGGGCAGCAGTGTCACCCTTGCCAACACCTCTagcatcagcatcagcatcagctccagcaccagcaccagcacatcaccTGTGCATGATCCTTCAGTGAAAGTCAGAAGCATGCGCCCCGGTAACCGCAAGATTGTTGCAAAGGTAGCTGATGGCAAAAGCTCTTCTGAAAGGGTCTCGCTTAGAGCTAAGAATGCTACCAAAGTGAATTCTCCACATTCAGTAGAATCCTTACCTATCAAGAAGGCTTTTGGTAGAACCAAAAAGGTTGGACGTGAAAGTGCAAATCAGAGACGTGCAACACCAAGGAGGGAAAGGAAAAGAGGGAGAGCTAAGTGA	1419	0.4285	MGVITWSTWEELLLGGAVLRHGIQDWTVVAAELKTRTLSPCNFTPEVCKAKYEELREQYSGCTDLFEELRKKRMAELKKDLEQSEGLIGSLESKLESLEAEGNEKTGDCRVNDGSAEQELQVPSQRLDRAKSSAKEVSKDAGSFTHETETNWSHGNLVPTMSCEEMETKPQVSGSTEQEKVLNVDKPAHTVYEGQEDGLKKWSGKRKRKDYGRNFNEVSVKESDLSADVCKESSISNCGEIVKPSGMNKENENLKKDGIMDLMEILDSVMVVRGSSAFCRRLDSQKRGRYKRMIRQHMDFDTIRSRISNQTIKSVMELFRDLLLLTNNAISFYSKITREYKTAIQIRDLVIKASREKLKCLGSSVTLANTSSISISISSSTSTSTSPVHDPSVKVRSMRPGNRKIVAKVADGKSSSERVSLRAKNATKVNSPHSVESLPIKKAFGRTKKVGRESANQRRATPRRERKRGRAK	472

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g01305	472	MobiDBLite	consensus disorder prediction	376	391	-	-
	Cca09g01305	472	MobiDBLite	consensus disorder prediction	129	143	-	-
	Cca09g01305	472	SUPERFAMILY	Bromodomain	260	361	IPR036427	GO:0005515
	Cca09g01305	472	ProSiteProfiles	Bromodomain profile.	278	340	IPR001487	GO:0005515
	Cca09g01305	472	SMART	bromo_6	255	359	IPR001487	GO:0005515
	Cca09g01305	472	Coils	Coil	52	72	-	-
	Cca09g01305	472	MobiDBLite	consensus disorder prediction	409	472	-	-
	Cca09g01305	472	MobiDBLite	consensus disorder prediction	419	434	-	-
	Cca09g01305	472	MobiDBLite	consensus disorder prediction	97	112	-	-
	Cca09g01305	472	MobiDBLite	consensus disorder prediction	376	396	-	-
	Cca09g01305	472	PANTHER	BROMODOMAIN PROTEIN	3	472	-	-
	Cca09g01305	472	Pfam	Bromodomain	264	343	IPR001487	GO:0005515
	Cca09g01305	472	Gene3D	-	248	362	IPR036427	GO:0005515
	Cca09g01305	472	Coils	Coil	74	101	-	-
	Cca09g01305	472	CDD	Bromodomain	262	352	-	-
	Cca09g01305	472	MobiDBLite	consensus disorder prediction	442	460	-	-
	Cca09g01305	472	MobiDBLite	consensus disorder prediction	97	157	-	-
	Cca09g01305	472	PANTHER	BROMODOMAIN-CONTAINING PROTEIN 8	3	472	-	-
	Cca09g01305	472	CDD	SANT	5	55	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g01305	Cca-Chr9	35731678	35737018	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g01305	-		-	pvu:PHAVU_002G224000g	604.364

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca09g01305	09	35731678	35737018	Cca08g02523	08	59548033	59552998	PCT