Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01303 ATGGGTAGTACGAATTCGGGGTTGAATTTGCAAATTTTCATAGTGTCCGTGTTGATTTTCACTGCAACTTTCTGTGGTGGAGACACTGACCCACTTGATGTTGCGGCGATTAATAGTTTGTATGTGGCTCTTGGCTCACCACCCCTTGAGGGTTGGAAAGCCGAAGGAGGAGATCCATGTTTGGAACAATGGCAAGGTGTGAGTTGTGTCTTCTCCAACATAACTGCCTTACAGCTGGGAGGCATGAATTTAAGTGGACAGCTGGGAAGTAATTTGGATTTCCCATCCATCATAGAAATGGATCTTAGCAACAACCAGATTGGAGGGACCATTCCATCCACTTTGTCCCCTACATTGAGGAATTTGTCTTTGTCAGCTAATCAGTTAAATGGAAGCATACCAGATGCCTTATCCTCACTAACTCAATTGTCAGACTTGGATCTGTCTGGCAACAACTTGAGTGGTCAGCTGCCTCCCTCAATGGAGAATTTGTCATCTCTTACCACATTACACTTGCAGAACAACCAACTTTCTGGGATCCTTTTTGTTTTGCAGGATCTCCCTCTTCAGGATCTGAACATAGAGAACAATATATTCTCTGGGCCAATTCCTCCAGAGTTGTTGAGTATACCTAATTTCAGAAAGGATGGGAATCCATTTAATACTACTATCATTCCATCACCGCCAGCTGCTTCCCCTGCACCTGTTGCTATGGCTCCTTCCCCAGAAAAATCACCTGGGAAAGCGGCAAATAATCCCCCTGCTACAAGAAAAGCACCAGCACCAATACCTGCAATTGCTGAGACGTCTTTCAAAACTAAGAAATTAGTTTGGATTGTTGGTTCAGGCTTTTTAATATTTGTTGCATTAGGAGTTTGTTTTCTAATGTTGTGTTATTTTAAGAGAAGACCAGGGAACAAGAGTTATAAGAAACACAACATGAATGCATATGAACGATCTTTAGAAAAACGTACATGCAGTGACTCCCCTTTTGATGCACCTAATGATGAGGAGAAAGGATGGGGTTCCAAACTTCCACCCCTGCAGCCAGCACCACCACATCAACTTCCAATCATTCCTGGGGAGAATTTAATCATCAATCAAGCTATATCTACCAAATCATCTGAAAGACAAATTATAACAAATTCCATCAAAGTTTATTCTGTTGCATCACTTCAGCAGTACACAAATAGTTTTTCTCATGATAATTATATTGGGGAAGGCACACTTGGCCCTGTTTATAAGGCTGAACTACCTGATGGAAAGTTTCTGGCAGTTAGGAAGCTGAATGCTACTGCTTGCATGGGACAAAACCATGAACAGTTTCTTCAATTAGCTTCCAGTATCTCCAAAATTCAACATGCTAATATTGTAAAGCTTATGGGCTACTGTGCTGAGTATAGCCAACGACTACTTGTATATGAGTATTGCAGTAGTGGGACCCTACATGACTCATTGCATACAGATGATAAATTTCAGATTAAACTTTCATGGGATAATCGCATTCAGGTGTCACTTGGAGCAGCAAGAGCTTTAGAGTATTTGCATGAGCACTGTCAGCCACCTATTGTGCACCGAAACTTTAGGTCTGCTAATATACTTCTCAATGACAAGTTGGAAGTGCGTGTCTCTGATTGTGGATTAGGTTCTTTACTATCTTCAGGCTCTGTTAGTCAGTTGTCAGGACGCCACCTCATAGCTAATGGTTACAGTGCCCCAGAATTCGAGTATGGAAGCTATATAATGCAAAGCGATGTCTTTAGTTTTGGAGTTGTAATGCTAGAACTCCTCACTGGACGAAAATCCTATGACAGCTCACGGCCTCTTGGAGAGCAATTTTTGGTGAGATGGGCAGTCCCTCAACTCCATGACATAGATGCATTATCAAGTATGGTTGATCCCTCCTTAAATGGAACATATCCTAAGAAATCATTGTCACGTTTTGCAGACATTATTTCTTCATGTATACAGCATGAACCTGAATTTCGACCAGCAATGTCAGAAATTGTTCAGGATCTCTTGCGAATGATGTAG 2034 0.4164 MGSTNSGLNLQIFIVSVLIFTATFCGGDTDPLDVAAINSLYVALGSPPLEGWKAEGGDPCLEQWQGVSCVFSNITALQLGGMNLSGQLGSNLDFPSIIEMDLSNNQIGGTIPSTLSPTLRNLSLSANQLNGSIPDALSSLTQLSDLDLSGNNLSGQLPPSMENLSSLTTLHLQNNQLSGILFVLQDLPLQDLNIENNIFSGPIPPELLSIPNFRKDGNPFNTTIIPSPPAASPAPVAMAPSPEKSPGKAANNPPATRKAPAPIPAIAETSFKTKKLVWIVGSGFLIFVALGVCFLMLCYFKRRPGNKSYKKHNMNAYERSLEKRTCSDSPFDAPNDEEKGWGSKLPPLQPAPPHQLPIIPGENLIINQAISTKSSERQIITNSIKVYSVASLQQYTNSFSHDNYIGEGTLGPVYKAELPDGKFLAVRKLNATACMGQNHEQFLQLASSISKIQHANIVKLMGYCAEYSQRLLVYEYCSSGTLHDSLHTDDKFQIKLSWDNRIQVSLGAARALEYLHEHCQPPIVHRNFRSANILLNDKLEVRVSDCGLGSLLSSGSVSQLSGRHLIANGYSAPEFEYGSYIMQSDVFSFGVVMLELLTGRKSYDSSRPLGEQFLVRWAVPQLHDIDALSSMVDPSLNGTYPKKSLSRFADIISSCIQHEPEFRPAMSEIVQDLLRMM 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01303 677 MobiDBLite consensus disorder prediction 230 261 - -
Cca09g01303 677 SUPERFAMILY L domain-like 33 212 - -
Cca09g01303 677 SUPERFAMILY Protein kinase-like (PK-like) 376 673 IPR011009 -
Cca09g01303 677 Gene3D Phosphorylase Kinase; domain 1 362 476 - -
Cca09g01303 677 Gene3D Ribonuclease Inhibitor 35 229 IPR032675 -
Cca09g01303 677 Gene3D Transferase(Phosphotransferase) domain 1 478 677 - -
Cca09g01303 677 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Cca09g01303 677 Pfam Protein tyrosine and serine/threonine kinase 402 673 IPR001245 GO:0004672|GO:0006468
Cca09g01303 677 ProSiteProfiles Protein kinase domain profile. 399 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01303 677 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 372 677 - -
Cca09g01303 677 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 140 319 - -
Cca09g01303 677 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 9 146 - -
Cca09g01303 677 PANTHER LEUCINE RICH REPEAT KINASE 2 372 677 - -
Cca09g01303 677 PANTHER LEUCINE RICH REPEAT KINASE 2 140 319 - -
Cca09g01303 677 PANTHER LEUCINE RICH REPEAT KINASE 2 9 146 - -
Cca09g01303 677 Pfam Leucine rich repeat 99 153 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01303 Cca-Chr9 35679979 35686409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01303 29 677 Strubbelig Receptor Gene Family AT4G03390 50.270 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Cca09g01303 PK_Tyr_Ser-Thr 7.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01303 - - gmx:100794130 1096.65