Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01300 ATGGCGGAGGGTGACGTGGACTTTTCGGAACTGTTCTCTGCTGGTGGTGACGATGACGATGATGGAATGTTCTATATAGATATTCAGACCGTTCTCACGGTTCTCGATGAAGACGATGATTGTATCCCTCAGGAGAATAGTCATGAGGATTCTTCTTCAAAAAATGTTTCACCTAGTGAATTAGGCATTCATGACACTTTTCAGATAGAAAAAGGGTCTCAAGTGTTGGAAGAACCACATTTGTCTAGGTTGGACTTTGTGGATTCAGTCGCAAGCTGTTCTCCATTCTGCTCGGATGTGTCAGATTCTGTGGCCAGAGGTTCAGTTGGTTTATCTGATTCTGCAGCAAATTCTATGCTTGACTGTGAACCTGAAAGCCAGGGACCTCAATCTCAGGCTAACTCTTCCCCAAATGCTTTTCGTGGTAATTTGAGCGACTCATTCTCTCCAGGTGAAAGTGATGAGATTTTCCACAAAGAAAGGACTGGAGTTTCTGAACATGAGATTCCTGGTTATGTGGAAACAAGTTTTCCTGTGGCACAGTCAAACAATACATTAATTCGCGGAGATAATTTGAATCTGAGTATGTGGAAGGGTGAAAATGAGAGCCACTTCAAGCAAGTGGGAGAGGATATTGAATCTGAACATGCTTCACTCAGTTCTATTGTTGACAATGATGATGTGAATATTGAAGATCATGTTGAAGACATTATTAGAGGAGTTTATGGGCAACAGGAAAATGACTCTTGTACATCTTTTGAAGCATCATTCGTGGATGCTGATAGAGCTTTGCATGTCTCAACTTCAACTGATTCTACTATTGGTCAAGGTTCTCATGTTTCCAGTGATTTTATTGACTACCATGCATCTTCAAATTATTACCAGGGAACAGATGATGGACCCTTTGTTGCTGACTCATCTCTTGGTTTTTTGCCTAATGGTATTTGTTCTCAATTGTGGCCAAAGGATGAAGAAATGACGAATAACATCAAGGTTGAAAATGTGGAATTAAATGCTGATGTTGCTTGTATGAGTAATGGCGTACCCTCAATTCCTACTGGGTTGATGTCCTTTCAAGATAGTCAAATTATGTTAGCTGATAGTGGTTATCCATCATTTCATTCTGGTAATGGTATTTTTGATGACATGTCATCATTGCCTCAGTTTGATTGTGATTCATACATGACATATGGAGATCATTACCAAAACAATTTTCACAACAAGGATGCTGAGTTCAATATAGGCCAAGAGGTGAAACAAAAACCTGGTATTTTTTCTCCTGTAAGGTATCAGGCTTACAAATGTTTTAAGAATGAGGATAATTATGCAGTTATAACATCTGAGTTATCCAATCAATATCAAGATAGCTCTGGTGGAATGGCTAGTTTTCAAGGAAACAAGGACAATTTGAATTTAAAAGCTGCAGATATATCTTGGCCGCATACCCAAGCACTAATGACCAATGAGAAGCAGTTTGGTTGTGTTCAGAGAGGAGGGGGGCAAACTTTTCAACAAAAACTTATTGATTCTCATCTTTCAAAAGGAAGAACTGGGAATTTCAATGTTGCAGAAGATCTTGATGTTTGCATTATTGAAGATATCAGTCATCCTGCTCCAATGAGTCAATCTGCAGACATTGGGAAATCCCTTAATATATATCAATCTTCTAGATATGTTGATTCCCAGTCTTACATAGATGGAAGCACAAGGCTAAAGGCATGTGATGAGCGAAATATATTACGAGTTGCGTTGCAGGATCTATCTCAGCCAAAGTCAGAAATTAGCCCACCAGAAGGATTGTTGGCAATTCCTCTTTTAAGACATCAGAGAATTGCTTTGTCATGGATGGTTCAAAAGGAAACATCAAGTTTATATTGCTCAGGAGGAATTCTTGCTGATGATCAGGGACTTGGAAAAACAGTTTCAACTATTGCATTAATATTAAAGGAAAGACCTCAATTACTTGATGGGTGCACCAATGCCCAGAGAAGTGAATTGGAAGCTCTGAATCTGGATGAGGATGATGTGCTTCCTCAGAATGGTAGAGTAAAGGAAGAATCTAATATGTGTGAGGATAACTCAAGTAGATCTCCAATCAAGAGCATGAATTTGTTGATGCAAGCAAAGGGAAGGCCATCTGCTGGGACCCTTATTGTTTGCCCCACTAGTGTCCTGCGTCAATGGGCTGAGGAGTTGCGTAGTAAGGTAACTAGTCAGGCAAATCTCTCTGTGCTAGTATACCATGGAAGCAATCGGACAAAAGACCCTTATGAGGTGGCTAAGTATGATGTTGTCCTAACAACTTATTCCATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGCTGACAAAGATGATGAGGAAAAGGGAGTTTCTGAAGATCATGCTGTACCAAGTAGGAAAAGAAAAAGCCCTTCTAATTCTAGTGAAAGTGGCAAGAAGAGATCGGAAGGAACAACTCCTAAGGCTGTTGCTGGGCCTCTTGCACAGGTGGCATGGTTTAGGGTTGTCCTGGATGAGGCCCAGAGTATAAAAAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCTAAGCGAAGATGGTGTCTGTCAGGGACTCCCATCCAGAATGCAATTGATGATCTTTACAGTTACTTCAGATTTCTAAGATATGACCCTTATTCTGTCTATACATCATTCTGTTCTACAATTAAGACCCCAATTAGCAGAAATCCAGCAAAAGGGTATAGAAAGCTACAAGCTGTCTTGAAGACGATAATGTTACGCCGGACCAAAGGTACACTGCTTGATGGGGAGCCTATTATTTCCTTGCCGCCTAAATATATAGAACTGAAAAAGGTGGATTTCTCAATGGAGGAACGTGATTTCTATTCTAGACTAGAGGCTGATTCGCGTGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTCAAGCAAAATTATGTCAACATTTTGCTGATGCTTCTGCGCCTTAGACAAGCTTGTGATCACCCTTTACTTGTCAAGCGTTACAATTCCAACTCTTTATGGAGTTCTTCTGTTCAGATGGCGAAGGAGCTTCCCCAGGAAAAACAAATCTTTCTTCTGAAATGTTTAAAGGCTTCCTTGGCCCTTTGTGGCATTTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGCCATGTTTTCTGTAACCAATGCATCTGTGAACATCTTACTATTGATGACAAACAGTGCCCTGCTACAAATTGCAATAGTCGACTGAGCACATCTCGGGTATTCTCAAAAGCCACACTTAACAGTTGTCTTTCTGACCAGGGCTGTGATATTTCTCCCAGTTGCTCTGGTTCTGAAGTAGAAGAATGTGAGCCTTGGTCTCAAAGACAGCCATATGATTCTTCAAAAATAAAGGCCGCGCTTGAGGTTTTGAAGTCATTGTGTAAGCCGCAGAGCTGTGCATCAAAAAGTATTTCTGAGCATAATACTTTGAGGGAAGATAATGAGTGTCCTGGGAACCACTCCAATAATAACAATGGGAAATCCTTCAAAGATTCTCACGAGAGTCAAAGTTTTTCTGAGAATAGAAGCTCTAATGATTTAGTTACTGTTGTAGGGGGGGAGAAAGCCATAGTGTTTTCTCAGTGGACGAGAATGCTTGATCTGCTTGAAGCGTGTCTTAAGAATTCTTCGATTAAGTATAGAAGGCTTGATGGAACAATGTCAGTTGTTGCAAGAGATAAAGCTGTAAAAGATTTTAACACTCTTCCCGAGGTATCAGTTATTATTATGTCTTTGAAGGCTGCCAGTCTTGGACTAAACTTGGTGGTAGCTTGTCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAAACTCGTCCTGTGACTGTTTTGCGGTTAACTGTGAGAGATACCGTTGAAGATCGTATACTAGCCCTTCAGCAAAAGAAAAGAATGATGGTTGCATCTGCATTTGGGGAGGATGGAACTGGTGATCGTCAGAGTCGCCTCACTGTGGATGACTTAAAATATCTGTTCATGATGTGA 4080 0.4081 MAEGDVDFSELFSAGGDDDDDGMFYIDIQTVLTVLDEDDDCIPQENSHEDSSSKNVSPSELGIHDTFQIEKGSQVLEEPHLSRLDFVDSVASCSPFCSDVSDSVARGSVGLSDSAANSMLDCEPESQGPQSQANSSPNAFRGNLSDSFSPGESDEIFHKERTGVSEHEIPGYVETSFPVAQSNNTLIRGDNLNLSMWKGENESHFKQVGEDIESEHASLSSIVDNDDVNIEDHVEDIIRGVYGQQENDSCTSFEASFVDADRALHVSTSTDSTIGQGSHVSSDFIDYHASSNYYQGTDDGPFVADSSLGFLPNGICSQLWPKDEEMTNNIKVENVELNADVACMSNGVPSIPTGLMSFQDSQIMLADSGYPSFHSGNGIFDDMSSLPQFDCDSYMTYGDHYQNNFHNKDAEFNIGQEVKQKPGIFSPVRYQAYKCFKNEDNYAVITSELSNQYQDSSGGMASFQGNKDNLNLKAADISWPHTQALMTNEKQFGCVQRGGGQTFQQKLIDSHLSKGRTGNFNVAEDLDVCIIEDISHPAPMSQSADIGKSLNIYQSSRYVDSQSYIDGSTRLKACDERNILRVALQDLSQPKSEISPPEGLLAIPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPQLLDGCTNAQRSELEALNLDEDDVLPQNGRVKEESNMCEDNSSRSPIKSMNLLMQAKGRPSAGTLIVCPTSVLRQWAEELRSKVTSQANLSVLVYHGSNRTKDPYEVAKYDVVLTTYSIVSMEVPKQPLADKDDEEKGVSEDHAVPSRKRKSPSNSSESGKKRSEGTTPKAVAGPLAQVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYSVYTSFCSTIKTPISRNPAKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKYIELKKVDFSMEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWSSSVQMAKELPQEKQIFLLKCLKASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTIDDKQCPATNCNSRLSTSRVFSKATLNSCLSDQGCDISPSCSGSEVEECEPWSQRQPYDSSKIKAALEVLKSLCKPQSCASKSISEHNTLREDNECPGNHSNNNNGKSFKDSHESQSFSENRSSNDLVTVVGGEKAIVFSQWTRMLDLLEACLKNSSIKYRRLDGTMSVVARDKAVKDFNTLPEVSVIIMSLKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRMMVASAFGEDGTGDRQSRLTVDDLKYLFMM 1359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01300 1359 SMART ring_2 1042 1080 IPR001841 -
Cca09g01300 1359 Gene3D - 580 664 IPR038718 -
Cca09g01300 1359 Gene3D - 941 1359 IPR027417 -
Cca09g01300 1359 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 444 1358 - -
Cca09g01300 1359 SMART helicmild6 1218 1301 IPR001650 -
Cca09g01300 1359 MobiDBLite consensus disorder prediction 779 810 - -
Cca09g01300 1359 Pfam SNF2-related domain 625 1003 IPR000330 GO:0005524|GO:0140658
Cca09g01300 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 934 1358 IPR027417 -
Cca09g01300 1359 CDD DEXDc_SHPRH-like 605 926 - -
Cca09g01300 1359 SUPERFAMILY RING/U-box 1039 1087 - -
Cca09g01300 1359 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 444 1358 - -
Cca09g01300 1359 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 620 888 IPR014001 -
Cca09g01300 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 589 926 IPR027417 -
Cca09g01300 1359 MobiDBLite consensus disorder prediction 116 154 - -
Cca09g01300 1359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1036 1093 IPR013083 -
Cca09g01300 1359 MobiDBLite consensus disorder prediction 1166 1192 - -
Cca09g01300 1359 MobiDBLite consensus disorder prediction 1161 1192 - -
Cca09g01300 1359 CDD SF2_C_SNF 1203 1311 - -
Cca09g01300 1359 Pfam Zinc finger, C3HC4 type (RING finger) 1042 1078 IPR018957 GO:0046872
Cca09g01300 1359 MobiDBLite consensus disorder prediction 116 150 - -
Cca09g01300 1359 MobiDBLite consensus disorder prediction 779 822 - -
Cca09g01300 1359 Gene3D - 815 927 IPR038718 -
Cca09g01300 1359 Gene3D - 698 804 IPR038718 -
Cca09g01300 1359 ProSitePatterns Zinc finger RING-type signature. 1057 1066 IPR017907 -
Cca09g01300 1359 SMART ultradead3 601 903 IPR014001 -
Cca09g01300 1359 ProSiteProfiles Zinc finger RING-type profile. 1042 1081 IPR001841 -
Cca09g01300 1359 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1194 1354 IPR001650 -
Cca09g01300 1359 Pfam Helicase conserved C-terminal domain 1201 1301 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01300 Cca-Chr9 35611274 35621314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01300 480 1358 RAD5 or RAD16-like Gene Family AT1G61140 58.850 0.0 976
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca09g01300 SNF2_N 2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01300 - - gmx:100802436 2156.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01300 09 35611274 35621314 Cca08g02517 08 59454383 59463083 PCT