Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01296 ATGAATTTGTTTTGGGATGCAATGtttttccattttttattttttatttttttGGGTTTTGTAGGTAAAGCAACGTTTGGGGAGCAAGAGTGGTACTTTTTCAGCCCAAGGGATCGGAAATACCCAAATGGGGCTAGGCCCAATAGAGCTGCTACTTCTGGGTATTGGAAGGCCACTGGAACTGACAAGCCTATACTGACATCTGATGGGCACCAGAAAGTTGGAGTTAAAAAAGCACTTGTTTTTTACGGTGGAAAGCCTCCAAAAGGGGTTAAAACCAATTGGATTATGCATGAGTATAGGCTCACTAATGATTCCTTTAATTCAAGCTCAAAACCTCCTCCTCTGGCTCATGATTCTCCAAACAAGAAAAATTCACTGAGGTTGGACGATTGGGTTTTGTGCCGAATATACAAGAAAAGCAACAGCAACACCCTGCCAAGGCCACTCCTGATGGAGCATGATGAGGAGCTTTCAATGGAGAACATGCTACCAACGATGTCAACTTTGTCAATGGCTAACCATAATACCAACATGCAAAATTCTAAACCTCCGTCTTCGAGGAGCACAACGCTAGGACTAGAAAATGATGACAACTTTTTCGATGGAATCTTAGCCGTTGATCACAGCATGCAAAATGGTTCTGACTCTCACTCATTCTCTCCAAACTCAAAGGGTAATGATAACACTACCAACTTCCCTATGAAACGTGCCATGTCGACATCACAGCAGCTTTGGAACAACGAGACAGGGTCTCCCGGGTCATCTTCTTCATGCAAGCGATTTCATGGTGATCTCAATAGTGCTGAAGACAACGATTCCTTCGTTTCCCTGCTCAACCAGTTTCCTCACAACGCAGCGTTTCATGGCTCCGTTGGAGATGGTGCTCTGAGGCAACAATTTCAGCTTCATGGAATGAATTGGAACTGA 930 0.4323 MNLFWDAMFFHFLFFIFLGFVGKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSDGHQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLTNDSFNSSSKPPPLAHDSPNKKNSLRLDDWVLCRIYKKSNSNTLPRPLLMEHDEELSMENMLPTMSTLSMANHNTNMQNSKPPSSRSTTLGLENDDNFFDGILAVDHSMQNGSDSHSFSPNSKGNDNTTNFPMKRAMSTSQQLWNNETGSPGSSSSCKRFHGDLNSAEDNDSFVSLLNQFPHNAAFHGSVGDGALRQQFQLHGMNWN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01296 309 MobiDBLite consensus disorder prediction 242 265 - -
Cca09g01296 309 ProSiteProfiles NAC domain profile. 1 140 IPR003441 GO:0003677|GO:0006355
Cca09g01296 309 MobiDBLite consensus disorder prediction 212 231 - -
Cca09g01296 309 Gene3D NAC domain 18 145 IPR036093 GO:0003677|GO:0006355
Cca09g01296 309 Pfam No apical meristem (NAM) protein 23 102 IPR003441 GO:0003677|GO:0006355
Cca09g01296 309 MobiDBLite consensus disorder prediction 242 263 - -
Cca09g01296 309 PANTHER NAC TRANSCRIPTION FACTOR 56 22 273 - -
Cca09g01296 309 SUPERFAMILY NAC domain 21 140 IPR036093 GO:0003677|GO:0006355
Cca09g01296 309 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 22 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01296 Cca-Chr9 35535320 35537357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01296 23 309 NAC Transcription Factor Family AT1G61110 48.344 1.29e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca09g01296 NAM 4e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01296 09 35535320 35537357 Cca08g02511 08 59366848 59377368 PCT