Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01294 ATGTGTGATCCAATGGCAGAGGAAGTGGCTAGTGAGACTTTTTACTCTCAATCCCATAGGCTGCAGTCAGCAGAAGCAAAACAACTCATCTATTTGAAAGTTAACAAACCCGTTACCGTCAAGTTTGAAGATGTGGTGCATAAAATGAAAAGTAGCAAAGGGAAAGGCTTGGTATGCAAAAAGGAGGAAAGTTCTGAGGAGGCACTGATCTTGAAAGGAATAAGTGGTGCTATTTTTCCAAGTGAATTGTTAGTCATTTTAGGCCCTTCTGGTTGTGGTAAAACAACTCTGTTAACTGCATTAGGAGGCAGGCTAAATCATGGTACCACTAAAGGAAGCATAACCTACAATGGCAAACCCCTCTCAAAATTAATGAAGCAAAACCTGGGATTTGTTGCTCAACACGATGTCTTCTATCCTCACCTATCAGTCACCGAGACACTAGTCTTTTCTGCTCTTCTTCGCTTGCCAAATAGCCTCTCCAAACAAGAGAAAATCTTGAAAGCTCAAGCAGTTATGAATGAGCTTGACTTGACTCATTGTAAGGACACTATAATGGGAGGGCCACTCCTAAGAGGTGTTTCAGGTGGGGAATGGAAAAGGGTTAGCATAGGGCAACAACTTTTAACTAATCCAAGTCTCTTGCTTGTTGATGAACCCACTTCAGGTCTTGACTCAACCACTGCTAGGCGAATTGTGGAAACTCTCTGTGATTTAGCTAAAAATGGAAGGACTGTCATAATGACTATACATCAGCCTTCCAGCAAACTGTTTTACATGTTCCAGAAGATTTTGCTTTTATCAGATGGTAGAAGCATGTACTTTGGAAAAGGAGAAAATGCCATGAGTTACTTCTCCAGTATTGGTTATGCTCCAACTGTAGCCATGAATCCAACAGATTTCTTACTTGATCTTGCAAATGGTATTTATTCTGAAAATTTGGAAGAGGATACAAATGCCACAAAACAAGTGTTGTTATCGGCTTTTGAGAGTAACCTTGCAAGACATGTGAAGACGGAACTTCAAATTTCCAGGGTTACATTTCATGACAATTCAGAAGATGAGATATTTGGTCAATGTTGCACAACTTGGTGGCAGCAGTTCCCTATACTACTAAGAAGGGATTTCAAAGAAAGAAAACATGAGCAATTTTCAGTCCGCAAAATCTGTCATGTTTTGTCCATATCATTCTTTGCAGGCTTGCTCTGGTGGCAGTCTGGAGCAGATCAAATGCAAAACCAGGTAGGACTACTTTTCTACTATACACAATTTTGTGGATTCTTCCCTATGGTCCAGTCCATCTTTACCTTGCCTCGTGATCGCGAAATGATAATAAAGGAAAGGTCCTTCTACATGTATAGACTCTCATCTTACCTCATAGCAAGTAATCTTGTTGATCTTCCATTACAGCTAGCCTTGCCAACCCTTTTTGTGACCATTACATATTGGATGGGAGGGCTAAAAGCCAATGCTTCAATTTTCTTTCGAACTCTAGTTATTGCTCTTCTCTATGCTTTGGTATCACAGGGTATTGGCCTGGCTATTGGTGCAGTGCTGGTAAATAATCAAAGAATGGCTGCTACAGTTGGAGCTGTGGTTATGACATTATTTGTTCTAGTAAATGGCTTCTTTGTTCAAAATACTCCAGCATTTGTATCCTGGATAAAGTACATATCTCATAGCTATTATTCCTATAAGCTCTTGCTAGGATCACAGTTTAAAGATTATAACACTTACCATTGTGGTCCAAATGCCACTTGTTCAGTAGGGAACTATCCTACAATAAAGCATGTAGGCCTCGACAAGCAAGGTTTATGTGTTGCAGCTTTGGTGGCAATGCTTGTAGGCTACAGACTAATTGCCTACTTTGCCCTTAGGATTGGCACTAGACATAACTAG 1899 0.4034 MCDPMAEEVASETFYSQSHRLQSAEAKQLIYLKVNKPVTVKFEDVVHKMKSSKGKGLVCKKEESSEEALILKGISGAIFPSELLVILGPSGCGKTTLLTALGGRLNHGTTKGSITYNGKPLSKLMKQNLGFVAQHDVFYPHLSVTETLVFSALLRLPNSLSKQEKILKAQAVMNELDLTHCKDTIMGGPLLRGVSGGEWKRVSIGQQLLTNPSLLLVDEPTSGLDSTTARRIVETLCDLAKNGRTVIMTIHQPSSKLFYMFQKILLLSDGRSMYFGKGENAMSYFSSIGYAPTVAMNPTDFLLDLANGIYSENLEEDTNATKQVLLSAFESNLARHVKTELQISRVTFHDNSEDEIFGQCCTTWWQQFPILLRRDFKERKHEQFSVRKICHVLSISFFAGLLWWQSGADQMQNQVGLLFYYTQFCGFFPMVQSIFTLPRDREMIIKERSFYMYRLSSYLIASNLVDLPLQLALPTLFVTITYWMGGLKANASIFFRTLVIALLYALVSQGIGLAIGAVLVNNQRMAATVGAVVMTLFVLVNGFFVQNTPAFVSWIKYISHSYYSYKLLLGSQFKDYNTYHCGPNATCSVGNYPTIKHVGLDKQGLCVAALVAMLVGYRLIAYFALRIGTRHN 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01294 632 ProSitePatterns ABC transporters family signature. 194 208 IPR017871 GO:0005524
Cca09g01294 632 Gene3D - 58 288 IPR027417 -
Cca09g01294 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 287 IPR027417 -
Cca09g01294 632 SMART AAA_5 80 271 IPR003593 -
Cca09g01294 632 Pfam ABC-2 type transporter 251 321 IPR043926 GO:0140359
Cca09g01294 632 Pfam ABC-2 type transporter 366 573 IPR013525 GO:0016020|GO:0140359
Cca09g01294 632 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 25 627 - -
Cca09g01294 632 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 25 627 - -
Cca09g01294 632 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 40 294 IPR003439 GO:0005524
Cca09g01294 632 Pfam ABC transporter 71 222 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01294 Cca-Chr9 35477473 35481260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01294 64 282 Calmodulin-binding Proteins AT2G36910 28.017 2.43e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01294 K05681 - gmx:100800295 1057.36