Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01281 ATGGGTTTGAGTTCTAAGCAGGTTTCTAGCAGTGGACTTGATTGGAAACAAACCTTATTGGAGGCTCAAAACTTGGAGCTACCAAAGCCTAATCTGATGAGGAAACAACAGCAACAACAAACTCAGCCTTCAGAGTCTTTGAAGTGTCCGAGATGTGACTCGACCAACACCAAATTTTGTTACTACAACAACTACAACAAGTCTCAGCCTCGCCATTTCTGCAGGGCTTGCAAGAGGCACTGGACAAAAGGTGGAACCCTACGCAATGTTCCAGTTGGTGGTGGCAGGAAGAATAAGAGGGTCAAAAAATCAAGCACTccaacaacaccttccaccaccaccaccaccactacttctacttgcactgccactGGCACAACCAACATGGATGCTATGTTAGGTAGCCACATGACAATTCAAACTTCTCTTCCAGATGATCATCAGAAAAACATGGCTCCCTCTCTCTACCATGCTCTAATTCGTCCACCACCTTTGCTGCTACATCAGAATCTGATGAACACAAGAGACTTAGAAGGCAAAGATCATTttggtattggtattggtattggtattggtaATATCTTTCCGAGTTCAACTTTGCCTCTTCCTCATCAAAGCCAAAGCCCACTCTTCCCTTTCTCAACCTCAAGCAGCTCTTTTGACACCAACCCTTGTTCAGTGTCAACCTCTCTGAGATCCTCGAATGTTTATAACTATGGGGAGGAGTTTAAAGCAATGGAGGAACCAACCATCAACAGTACCATAGTGCCTAGCACAGGTGGCACTAACACACAACCATGGGAGATAGCAGCAACAAGTGGTGCTGGCTTGGGAAGTTCAAGCTATTGGAATTGGGAGGATTTTGACTCATTGGTCTCAACTGATCTAAAGGATCCCTGGGATGATTCTGATATCAAACCCTGA 924 0.4069 MGLSSKQVSSSGLDWKQTLLEAQNLELPKPNLMRKQQQQQTQPSESLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKSSTPTTPSTTTTTTTSTCTATGTTNMDAMLGSHMTIQTSLPDDHQKNMAPSLYHALIRPPPLLLHQNLMNTRDLEGKDHFGIGIGIGIGNIFPSSTLPLPHQSQSPLFPFSTSSSSFDTNPCSVSTSLRSSNVYNYGEEFKAMEEPTINSTIVPSTGGTNTQPWEIAATSGAGLGSSSYWNWEDFDSLVSTDLKDPWDDSDIKP 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01281 307 Pfam Dof domain, zinc finger 46 99 IPR003851 GO:0003677|GO:0006355
Cca09g01281 307 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 222 IPR045174 GO:0003700|GO:0006355
Cca09g01281 307 MobiDBLite consensus disorder prediction 29 48 - -
Cca09g01281 307 MobiDBLite consensus disorder prediction 30 48 - -
Cca09g01281 307 MobiDBLite consensus disorder prediction 104 123 - -
Cca09g01281 307 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Cca09g01281 307 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Cca09g01281 307 PANTHER OS06G0284500 PROTEIN 30 222 - -
Cca09g01281 307 MobiDBLite consensus disorder prediction 85 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01281 Cca-Chr9 35276047 35277636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01281 33 118 C2C2-Dof Transcription Factor Family AT5G60850 63.218 9.59e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca09g01281 zf-Dof 1.4e-31 No_clan