Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01255 ATGGATGCTAAGGCAGCTGTAGATTTAATGGAGTCTTCCTCTGAGGTTCATTTTTCTGGATTTCACATGGATGGTTTTGAGCAAAGAAAGGCTATCATAGAACAACCAACAACCTCTGAAACTGACATGTATAAACAACCATTTGTCATAGGTGTTGCTGGGGGTGCAGCATCTGGCAAGACACAAGTTTGTGACATGATTATTCAGCAGCTTCATGACCAACGAGTTGTACTTGTTAATCAGGATTCTTTTTACAATAACTTGACGGAGGAGGAACGTACAAGGGTACAAGATTACAACTTTGATCATCCTGATGCTTTTGATATTGGGGAATTGCTACGTGTTATGGACAAGTTGAAGCATGGTGAAGCAGTAGATATTCCAAAGTATGATTTTAAGAGTTACAAGAGTGATGTGTTACGAAGGGTGAACCCTTCAGATGTTATTATTTTGGAAGGCATCCTTGTTTTCCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTCGATACAGATGCTGATGTTCGTTTGGCAAGAAGGATTAGGCGTGATACTACTGAGAAGGGCCGGGATATTGGAGCAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCACGTGGAGGGGACAATCATGTGGCAATTGATTTGATTGTACAGCATATCCGTACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCGAATTTATACGTCATTCACTCAACTTTTCAGATACGGGGAATGCATACCCTAATTCGTGACGCCCAGACCACAAAACATGATTTTGTATTTTACTCTGATCGTTTGATTCGATTGGTAGTAGAACATGGTTTGGGTCATCTGCCATTTACAGAAAAGCAAGTAATCACTCCTACTGGTTCTGTATACACTGGTGTGGATTTTTGCAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAGTGGGGAGAGCATGGAGAATGCTTTAAGAGCATGCTGTAAAGGTATCAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGCTAATATATGAAAAGTTGCCAAATGATATCTCCGATAGGCATGTGTTGCTGTTGGACCCTATACTTGGCACAGGTAATTCGGCTGTGCAAGCGATTTCTTTACTCATAAGAAAGGGTGTACCAGAGTCCAACATTATATTTCTTAATCTCATATCTGCACCTAAAGGGGTTCATGTGGTATGCAAAAGTTTCCCAAGAATAAAGATAGTGACATCTGAGATTGAGATGGGTTTGAATGAAGATTTCCGTGTCATACCTGGCATGGGCGAGTTTGGAGATAGGTACTTTGGAACAGATGATGATGTTGAGCAAGTGGTTTCTTCTCCGTAG 1428 0.4013 MDAKAAVDLMESSSEVHFSGFHMDGFEQRKAIIEQPTTSETDMYKQPFVIGVAGGAASGKTQVCDMIIQQLHDQRVVLVNQDSFYNNLTEEERTRVQDYNFDHPDAFDIGELLRVMDKLKHGEAVDIPKYDFKSYKSDVLRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTTEKGRDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIHSTFQIRGMHTLIRDAQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIRKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEMGLNEDFRVIPGMGEFGDRYFGTDDDVEQVVSSP 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01255 475 TIGRFAM udk: uridine kinase 46 245 IPR000764 -
Cca09g01255 475 Gene3D - 249 464 IPR029057 -
Cca09g01255 475 Pfam Uracil phosphoribosyltransferase 263 464 - -
Cca09g01255 475 CDD PRTases_typeI 322 437 IPR000836 -
Cca09g01255 475 Gene3D - 43 248 IPR027417 -
Cca09g01255 475 CDD UMPK 49 245 IPR000764 -
Cca09g01255 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 238 IPR027417 -
Cca09g01255 475 PANTHER URIDINE KINASE 15 466 - -
Cca09g01255 475 Pfam Phosphoribulokinase / Uridine kinase family 49 233 IPR006083 GO:0005524|GO:0016301
Cca09g01255 475 PRINTS Uridine kinase signature 47 64 - -
Cca09g01255 475 PRINTS Uridine kinase signature 77 88 - -
Cca09g01255 475 PRINTS Uridine kinase signature 122 137 - -
Cca09g01255 475 PRINTS Uridine kinase signature 177 187 - -
Cca09g01255 475 PRINTS Uridine kinase signature 191 202 - -
Cca09g01255 475 PRINTS Uridine kinase signature 213 226 - -
Cca09g01255 475 SUPERFAMILY PRTase-like 248 465 IPR029057 -
Cca09g01255 475 PANTHER URIDINE KINASE 15 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01255 Cca-Chr9 34931616 34939391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01255 1 467 PRT Gene Family AT4G26510 83.582 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01255 K00876 - gmx:100792258 906.746
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01255 09 34931616 34939391 Cca05g02050 05 40272548 40278968 PCT