Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01253 ATGCCTGGAAGCCTAAGGAATCTCTCACTTTCTCCCAAAATCTTCTCCTTCACCTTGCTTCTCTCATTAAACTCCCTTCTCTTTTTTCCATGTTGTCACTCCCTTGATGAGCAAGGCCAGGCTCTTATAGCATGGAAAAAGAGCTTAAACAACACTTCAGATGTGTTATCATCATGGAACCCTTCAGCCTCAAGTCCATGCAACTGGTTTGGTGTGTTTTGCAACTCACAAGGAGAAGTCATAGAGATAAATTTGAAGTCAATGAACTTGCAAGGCTCATTGCCTTCAAATTTTCACCCTCTCAGGTCCTTGAAGATTCTTGTCCTCTCATCAACCAACCTCACAGGAAGGATCCCAAAAGAGATTGGAGACTATCTAGAGCTCACTTTTGTTGATCTAAGTAGCAATTCTCTCTTTGGTGAAATCCCTGAAGAAATTTGCAGCCTAAGAAAGCTGCTAAGTTTGTCTCTCCACACAAACTTTCTTCAAGGCAACATTCCATTCAACATTGGAAATTTGTCGAGTCTTGTGAACTTGACACTCTATGACAACCACCTCAGTGGTGAAATTCCGAGGAGCATTGGCTCCTTAAGCAAGCTCCAAGTTTTAAGAGCCGGTGGTAATAAGAACCTCAAGGGTGAGATACCATGGGAGATTGGAAACTGCACCAACTTGGTCATGCTAGGCCTTGCTGAAACCAGCATTTCAGGAAGCCTTCCTTCTTCAATCAAAATGCTGAAAAGAATCAAGACCATAGCCATATACACAACTCTATTGTCAGGCTCCATTCCAGAAGAGATTGGCAATTGCAGTGAGTTGGAGAATCTGTACTTGCATCAGAACTCTATCTCAGGCTCAATACCAAGCCAAATTGGAGAACTCAGCAAACTCAAGAGTCTACTGTTATGGCAAAACAATATAGTAGGTACAATCCCTGAAGAGCTAGGAAGCTGCACAGAGATCAGAGTCATAGACTTCTCAGAAAACCTTCTTACCGGTAGCATACCAAGGAGTTTTGGGAAACTTTCAAATCTCCAAGAACTTCAACTAAGTGTCAACCAGCTCTCAGGTATAATCCCTCCCGAGATTTCAAATTGCACTTCTCTGACTCAACTGGAACTTGACAACAATGCTCTCTCTGGTGAGATTCCTGATCTTATTGGAAACTTGAAAGGCTTAACTCTCTTCTTTGCATGGAAAAACAAGCTAAGTGGAAACATCCCAGAGAGTCTTGCTGAGTGCCAAGAACTTGAGGCAATTGATCTGTCTTACAACAACTTGATTGGTCCAATTCCAAAACAACTATTTGGATTGAGGAACCTCACCAAATTTCTGCTTCTTTCCAATGATTTATCGGGCTTTATACCACCTGACATAGGAAACTGCACAAACCTCTACAGGCTGAGGTTAAATCACAATAGACTAGCAGGCAACATTCCACCAGAGATTGGCAACTTGAAGAGTTTGAATTTTATGGACATGAGCAGCAATCATCTTGCAGGGGAGATTCCTCCAACACTTTCTGGATGCCAGAATCTTGAGTTCCTAGATCTTCATTCCAATAGTCTCACTGGTTCTGTTCCAGATTCTCTTCCCAAAAGCCTTCAGTTGATTGACTTGTCAGACAACAGGCTAACTGGTGCATTGAGTCATACCATTGGTTCATTGGTCGAGTTGACCAAACTCAACCTTGGAAACAATCAGCTAACTGGAAGAATACCAGCAGAGATCTTATCTTGCACTAAGCTACAACTTTTGGACCTAGGAAGCAATAGATTCAATGGAGAAATTCCCAATGAAGTTGGTCTCATTCCTTCACTGGAAATCTCTCTCAATCTTAGCTGCAACCAGTTTTCTGGTAAAATTCCTTCCCAATTCTCTAGTCTCACCAAACTAGGAGTGCTTGATCTCTCACACAACAAGCTCTCAGGGAACTTAGATTCTCTTTCTGACCTTGAGAATCTTGTTTCCTTGAATATTTCCTTCAATGGCCTCTCTGGTGAGTTGCCTAACACCCCATTTTTCCACAAACTCCCTCTTAGTGATCTTGCTGAAAATCAAGGCCTCTACATTGCTGGAGGTGTTGCAACTCCTGCTGACAAAGGTCATGCTAGATCAGCGATGAAGTTTGTTATGTCCATTCTCTTAAGCACCAGTGCAGTATTAGTGCTGCTCACAATCTATGTCTTAGTCAGAACTCACATGGCCAACAAGGGGCTCATGGAAAATGAAGCTTGGGAGATGACTTTGTATCAGAAGCTTGATTTCTCCATTGATGACATTGTCTTGAATTTGACATCAGCCAATGTGATTGGCACTGGAAGCTCAGGAGTTGTGTACAAGGTGACAACTCCAAATGGTGAAACACTGGCAGTTAAGAAAATGTGGTCATCAGAAGAGTCTGGAGCATTCAACTCTGAAATTCAAACACTGGGGTCAATTAGGCACAAGAACATCATCAGGCTTCTGGGGTTGGGATCAAACAAGAACCTGAAGTTGCTGTTTTATGACTACCTCCCTAATGGAAGCCTGAGTTCATTGCTCCATGGTTCAGGAAAGGGAAAAGCTGAATGGGAGACTAGATATGATGTTATATTAGGTGTGGCACATGCTCTTGCATATTTGCACCATGATTGTTTACCTGCTATTATTCATGGGGATGTCAAAGCCATGAATGTGTTACTAGGTCCTGGATATCAACCTTACCTTGCTGACTTTGGCCTAGCAAGAATTGCAACTGAAAATGATGACAATACTAATTCCATGCCAGTTCAAAGACATTACCTAGCTGGTTCATATGGATACATGGCTCCTGAGCATGCATCACTGCAGCCTATCACTGAAAAGAGTGATGTGTACAGTTTTGGCATGGTTCTTCTAGAGGTTCTCACAGGAAGGCACCCTTTAGACCCAACTCTACCAGGGGGTGCACACTTGGTTCAGTGGGTTAGGAACCACTTGGCCACCAAAGGAGACCCTTCTGACATTCTTGACACAAAGCTGAGAGGGAGGGCTGATCCAACCATGCATGAAATGCTTCAAACTCTAGCAGTGTCATTTCTATGTGTAAGCACTAGGGCTCATGACCGTCCAACAATGAAGGATGTTGTTGCAATGCTCAAGGAAATTAGACCCCTTGAGACCTCAAGGGCAGACCCTGATGTGTTGAAGGGAGGTTTAACAGCACATAGTTCACCACCACCTCCTAAGAATGTGGTCTCACATGGATCCTCTACGTGCTCTTATAATTTCTCAGACAACACAATCAGTTGA 3273 0.4299 MPGSLRNLSLSPKIFSFTLLLSLNSLLFFPCCHSLDEQGQALIAWKKSLNNTSDVLSSWNPSASSPCNWFGVFCNSQGEVIEINLKSMNLQGSLPSNFHPLRSLKILVLSSTNLTGRIPKEIGDYLELTFVDLSSNSLFGEIPEEICSLRKLLSLSLHTNFLQGNIPFNIGNLSSLVNLTLYDNHLSGEIPRSIGSLSKLQVLRAGGNKNLKGEIPWEIGNCTNLVMLGLAETSISGSLPSSIKMLKRIKTIAIYTTLLSGSIPEEIGNCSELENLYLHQNSISGSIPSQIGELSKLKSLLLWQNNIVGTIPEELGSCTEIRVIDFSENLLTGSIPRSFGKLSNLQELQLSVNQLSGIIPPEISNCTSLTQLELDNNALSGEIPDLIGNLKGLTLFFAWKNKLSGNIPESLAECQELEAIDLSYNNLIGPIPKQLFGLRNLTKFLLLSNDLSGFIPPDIGNCTNLYRLRLNHNRLAGNIPPEIGNLKSLNFMDMSSNHLAGEIPPTLSGCQNLEFLDLHSNSLTGSVPDSLPKSLQLIDLSDNRLTGALSHTIGSLVELTKLNLGNNQLTGRIPAEILSCTKLQLLDLGSNRFNGEIPNEVGLIPSLEISLNLSCNQFSGKIPSQFSSLTKLGVLDLSHNKLSGNLDSLSDLENLVSLNISFNGLSGELPNTPFFHKLPLSDLAENQGLYIAGGVATPADKGHARSAMKFVMSILLSTSAVLVLLTIYVLVRTHMANKGLMENEAWEMTLYQKLDFSIDDIVLNLTSANVIGTGSSGVVYKVTTPNGETLAVKKMWSSEESGAFNSEIQTLGSIRHKNIIRLLGLGSNKNLKLLFYDYLPNGSLSSLLHGSGKGKAEWETRYDVILGVAHALAYLHHDCLPAIIHGDVKAMNVLLGPGYQPYLADFGLARIATENDDNTNSMPVQRHYLAGSYGYMAPEHASLQPITEKSDVYSFGMVLLEVLTGRHPLDPTLPGGAHLVQWVRNHLATKGDPSDILDTKLRGRADPTMHEMLQTLAVSFLCVSTRAHDRPTMKDVVAMLKEIRPLETSRADPDVLKGGLTAHSSPPPPKNVVSHGSSTCSYNFSDNTIS 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01253 1090 Gene3D Phosphorylase Kinase; domain 1 731 838 - -
Cca09g01253 1090 Gene3D Ribonuclease Inhibitor 333 430 IPR032675 -
Cca09g01253 1090 Gene3D Ribonuclease Inhibitor 610 693 IPR032675 -
Cca09g01253 1090 Gene3D Ribonuclease Inhibitor 431 531 IPR032675 -
Cca09g01253 1090 Gene3D Ribonuclease Inhibitor 35 193 IPR032675 -
Cca09g01253 1090 ProSiteProfiles Protein kinase domain profile. 765 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01253 1090 Coils Coil 1088 1090 - -
Cca09g01253 1090 SUPERFAMILY RNI-like 287 608 - -
Cca09g01253 1090 ProSitePatterns Protein kinases ATP-binding region signature. 771 794 IPR017441 GO:0005524
Cca09g01253 1090 SMART serkin_6 765 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01253 1090 SUPERFAMILY Protein kinase-like (PK-like) 763 1040 IPR011009 -
Cca09g01253 1090 Pfam Leucine rich repeat 610 665 IPR001611 GO:0005515
Cca09g01253 1090 Pfam Leucine rich repeat 534 593 IPR001611 GO:0005515
Cca09g01253 1090 Pfam Leucine rich repeat 296 355 IPR001611 GO:0005515
Cca09g01253 1090 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 5 1056 - -
Cca09g01253 1090 SMART LRR_typ_2 342 366 IPR003591 -
Cca09g01253 1090 SMART LRR_typ_2 438 462 IPR003591 -
Cca09g01253 1090 SMART LRR_typ_2 486 510 IPR003591 -
Cca09g01253 1090 SMART LRR_typ_2 101 125 IPR003591 -
Cca09g01253 1090 SMART LRR_typ_2 629 652 IPR003591 -
Cca09g01253 1090 SMART LRR_typ_2 556 580 IPR003591 -
Cca09g01253 1090 SMART LRR_typ_2 294 318 IPR003591 -
Cca09g01253 1090 SMART LRR_typ_2 173 197 IPR003591 -
Cca09g01253 1090 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 1056 - -
Cca09g01253 1090 Gene3D Ribonuclease Inhibitor 532 609 IPR032675 -
Cca09g01253 1090 Gene3D Ribonuclease Inhibitor 194 332 IPR032675 -
Cca09g01253 1090 ProSitePatterns Serine/Threonine protein kinases active-site signature. 883 895 IPR008271 GO:0004672|GO:0006468
Cca09g01253 1090 SUPERFAMILY RNI-like 82 380 - -
Cca09g01253 1090 PRINTS Leucine-rich repeat signature 535 548 - -
Cca09g01253 1090 PRINTS Leucine-rich repeat signature 629 642 - -
Cca09g01253 1090 MobiDBLite consensus disorder prediction 1050 1078 - -
Cca09g01253 1090 Pfam Protein kinase domain 768 1037 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01253 1090 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Cca09g01253 1090 SUPERFAMILY L domain-like 610 687 - -
Cca09g01253 1090 Gene3D Transferase(Phosphotransferase) domain 1 839 1055 - -
Cca09g01253 1090 ProSiteProfiles Leucine-rich repeat profile. 631 653 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01253 Cca-Chr9 34855363 34859291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01253 32 1089 Receptor kinase-like Gene Family AT5G56040 67.854 0.0 1429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca09g01253 Pkinase 2.4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01253 - - gmx:100802880 1997.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01253 09 34855363 34859291 Cca09g01253 09 34855363 34859291 ECH