Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca09g01232 | ATGTCTTCACCAACCACCACCATTGCAACCACCTTCACCATCCTCTTCATCATCCTTCTCACACCAACGCTCTCCCTCAACACCACCTTCTCCTTCCCCTCCTTCCCCCTCCGCAACATCACCCTCCTCGGCGACTCCTTCCTCCGCAACGGCCTCGTCGGACTCACCCGCGCCACCCCCGTCCCCGCCTCCTCCTCCGGCACCCTCCTCTACAACCACCCCTTCCCCACCACCACCACCACCACCCCTTCCTCCCTCTCCACCACCTTCTCCTTCTCCATCACCAACACCACCTCCTCCACCTCCTCCTCCACCCTCACCTTCTTCCTCAACTCCTCCCACTCCCTCTCCCTCCTCTTCCACCCCTCCCCAACCCTCCTCTCTCTCCAACTCTCCACCTCCAACACCACCACACAATCCACCCTTCACCTCATCACTCCCAACCCCATAATCACCTCATGGCTTCTCTACAATTCCCACAACAAAAAACTCTATGTCTACTTAAACTACtcatcatcatcatcatcatcatcatcatcaACCTCCTCCAAGCCTCAAAACCCTTCCTTGGCCGTTGACCTTGACCTTGATCACTACTTCAACGACAGCCTCTACGTGGGGTTCTCCGCTTCCACGCTAGGAAGCACCGACCTTGTCCAACTCATGACTTGGAGCTTCGAGTTTCAATCTTTTGAGAAACCTGATTTCATCAACTTGCACCCCCACAACGGTTCTTTGAGCCCCTCGACTTTTGTTGCTTCCAGCTCCACCGAGGGTAACCGTGGCAAGAGGTttgtgattggtcttggtgttggtgttgtggttcctgctttcttctgcttggtgcttgtggttttgGGCTATGTTTCTTTCCAAAAGTGGCGTGGTGTGAGGAGGCGCAAGGGTTTTGCTTTGGGGGCTCCGGGGTGTTGTCCCAAGGAGTTTGGTTACAAGGAGGTGAAGTTGGCCACTAAGGGGTTTCATGCTTCCAGGGTCATTGGGAAGGGTTCGTTTGGGACGGTCTACAAGGCTTTGTTTGAGGCTTCTGGGACCGTTGCTGCGGTTAAAAGGTCAAGGCAATATGAAGGGCGAACTGAGTTCCTGGCTGAGCTTTCTGTTATAGCAGGTTTGAGGCACAAGAATTTGGTTCAGCTTTTAGGATGGTGTGTTGAAAAGGGTGAGTTGTTGCTTGTGTATGAGTTCATGCCCAATGGGAGCCTGGACAAGGTGCTTTACCAAGAATGTGAAGGTGGGAGTGGGACTAATAATAACAATGTGTTGAGTTGGTTTCATAGGGTGAACATTGCTGTTGGCTTGGCCTCTGTTTTGAGTTACTTGCATCAAGAGTGTGAGCAAAGGGTAATTCATAGGGACATTAAGGCTGGTAACATATTGCTAGATGGAAGCATGAACCCTAGGTTGGGGGATTTTGGCTTGGCCAAGCTTATGGACCATGACAAGAGTCCTGTTTCAACACTAACTGCAGGCACAATGGGGTACCTTGCTCCTGAGTATCTCCAATGTGGTGTGGCAAATGAGAAGACTGATGTTTTCAGCTATGGGGTGGTGATCCTTGAAGTGGCATGTGGTAGGAGGCCAATTGAGAAAGAGGGGCAGAAGATGGTGAATTTGGTGGATTGGGTTTGGGGTTTGCACTCTCAAGGGAGGATCATTGAGGCTGCTGATAGGAGGTTGAATGGGGAGTTCAAGGAAGGGGAAATGAGGAAGCTTTTGCTTTTGGGGCTCAGTTGTGCTAACCCTGATAGTGCTCAAAGGCCTTCCATGAGAAGGGTGTTGCAGATTCTCAACAATGATCAAGGAGTGTCTCTTGTGGTGCCTAAAGTGAAACCAACACTTACTTTTTCCACTTCCCTGCCTTTGAGTCTTGATGAGATTGTCTCAGATGCTGATGAGGAAGAGGTCTGTCCTGGCCAGGTTGTGTGTGAGATCAAAATTGATTGA | 1962 | 0.4867 | MSSPTTTIATTFTILFIILLTPTLSLNTTFSFPSFPLRNITLLGDSFLRNGLVGLTRATPVPASSSGTLLYNHPFPTTTTTTPSSLSTTFSFSITNTTSSTSSSTLTFFLNSSHSLSLLFHPSPTLLSLQLSTSNTTTQSTLHLITPNPIITSWLLYNSHNKKLYVYLNYSSSSSSSSSSTSSKPQNPSLAVDLDLDHYFNDSLYVGFSASTLGSTDLVQLMTWSFEFQSFEKPDFINLHPHNGSLSPSTFVASSSTEGNRGKRFVIGLGVGVVVPAFFCLVLVVLGYVSFQKWRGVRRRKGFALGAPGCCPKEFGYKEVKLATKGFHASRVIGKGSFGTVYKALFEASGTVAAVKRSRQYEGRTEFLAELSVIAGLRHKNLVQLLGWCVEKGELLLVYEFMPNGSLDKVLYQECEGGSGTNNNNVLSWFHRVNIAVGLASVLSYLHQECEQRVIHRDIKAGNILLDGSMNPRLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQCGVANEKTDVFSYGVVILEVACGRRPIEKEGQKMVNLVDWVWGLHSQGRIIEAADRRLNGEFKEGEMRKLLLLGLSCANPDSAQRPSMRRVLQILNNDQGVSLVVPKVKPTLTFSTSLPLSLDEIVSDADEEEVCPGQVVCEIKID | 653 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca09g01232 | 653 | Gene3D | Transferase(Phosphotransferase) domain 1 | 402 | 611 | - | - | |
Cca09g01232 | 653 | CDD | STKc_IRAK | 333 | 604 | - | - | |
Cca09g01232 | 653 | PANTHER | L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.7-RELATED | 29 | 635 | - | - | |
Cca09g01232 | 653 | Gene3D | - | 26 | 122 | - | - | |
Cca09g01232 | 653 | PANTHER | - | 29 | 635 | - | - | |
Cca09g01232 | 653 | Pfam | Legume lectin domain | 28 | 117 | IPR001220 | GO:0030246 | |
Cca09g01232 | 653 | Pfam | Legume lectin domain | 139 | 230 | IPR001220 | GO:0030246 | |
Cca09g01232 | 653 | SUPERFAMILY | Concanavalin A-like lectins/glucanases | 28 | 230 | IPR013320 | - | |
Cca09g01232 | 653 | ProSiteProfiles | Protein kinase domain profile. | 327 | 619 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca09g01232 | 653 | Pfam | Protein kinase domain | 327 | 600 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca09g01232 | 653 | ProSitePatterns | Protein kinases ATP-binding region signature. | 333 | 356 | IPR017441 | GO:0005524 | |
Cca09g01232 | 653 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 454 | 466 | IPR008271 | GO:0004672|GO:0006468 | |
Cca09g01232 | 653 | Gene3D | - | 123 | 228 | - | - | |
Cca09g01232 | 653 | Gene3D | Phosphorylase Kinase; domain 1 | 312 | 401 | - | - | |
Cca09g01232 | 653 | SMART | serkin_6 | 327 | 601 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca09g01232 | 653 | SUPERFAMILY | Protein kinase-like (PK-like) | 312 | 618 | IPR011009 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca09g01232 | Cca-Chr9 | 34555648 | 34557906 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca09g01232 | 25 | 638 | Receptor kinase-like Gene Family | AT5G55830 | 51.740 | 0.0 | 613 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_L-LEC | Cca09g01232 | Pkinase | 2.1e-46 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca09g01232 | - | - | gmx:100808744 | 859.366 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca09g01232 | 09 | 34555648 | 34557906 | Cca09g01232 | 09 | 34555648 | 34557906 | ECH | |
Cca09g01232 | 09 | 34555648 | 34557906 | Cca05g02029 | 05 | 40085006 | 40087875 | PCT |