Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01232 ATGTCTTCACCAACCACCACCATTGCAACCACCTTCACCATCCTCTTCATCATCCTTCTCACACCAACGCTCTCCCTCAACACCACCTTCTCCTTCCCCTCCTTCCCCCTCCGCAACATCACCCTCCTCGGCGACTCCTTCCTCCGCAACGGCCTCGTCGGACTCACCCGCGCCACCCCCGTCCCCGCCTCCTCCTCCGGCACCCTCCTCTACAACCACCCCTTCCCCACCACCACCACCACCACCCCTTCCTCCCTCTCCACCACCTTCTCCTTCTCCATCACCAACACCACCTCCTCCACCTCCTCCTCCACCCTCACCTTCTTCCTCAACTCCTCCCACTCCCTCTCCCTCCTCTTCCACCCCTCCCCAACCCTCCTCTCTCTCCAACTCTCCACCTCCAACACCACCACACAATCCACCCTTCACCTCATCACTCCCAACCCCATAATCACCTCATGGCTTCTCTACAATTCCCACAACAAAAAACTCTATGTCTACTTAAACTACtcatcatcatcatcatcatcatcatcatcaACCTCCTCCAAGCCTCAAAACCCTTCCTTGGCCGTTGACCTTGACCTTGATCACTACTTCAACGACAGCCTCTACGTGGGGTTCTCCGCTTCCACGCTAGGAAGCACCGACCTTGTCCAACTCATGACTTGGAGCTTCGAGTTTCAATCTTTTGAGAAACCTGATTTCATCAACTTGCACCCCCACAACGGTTCTTTGAGCCCCTCGACTTTTGTTGCTTCCAGCTCCACCGAGGGTAACCGTGGCAAGAGGTttgtgattggtcttggtgttggtgttgtggttcctgctttcttctgcttggtgcttgtggttttgGGCTATGTTTCTTTCCAAAAGTGGCGTGGTGTGAGGAGGCGCAAGGGTTTTGCTTTGGGGGCTCCGGGGTGTTGTCCCAAGGAGTTTGGTTACAAGGAGGTGAAGTTGGCCACTAAGGGGTTTCATGCTTCCAGGGTCATTGGGAAGGGTTCGTTTGGGACGGTCTACAAGGCTTTGTTTGAGGCTTCTGGGACCGTTGCTGCGGTTAAAAGGTCAAGGCAATATGAAGGGCGAACTGAGTTCCTGGCTGAGCTTTCTGTTATAGCAGGTTTGAGGCACAAGAATTTGGTTCAGCTTTTAGGATGGTGTGTTGAAAAGGGTGAGTTGTTGCTTGTGTATGAGTTCATGCCCAATGGGAGCCTGGACAAGGTGCTTTACCAAGAATGTGAAGGTGGGAGTGGGACTAATAATAACAATGTGTTGAGTTGGTTTCATAGGGTGAACATTGCTGTTGGCTTGGCCTCTGTTTTGAGTTACTTGCATCAAGAGTGTGAGCAAAGGGTAATTCATAGGGACATTAAGGCTGGTAACATATTGCTAGATGGAAGCATGAACCCTAGGTTGGGGGATTTTGGCTTGGCCAAGCTTATGGACCATGACAAGAGTCCTGTTTCAACACTAACTGCAGGCACAATGGGGTACCTTGCTCCTGAGTATCTCCAATGTGGTGTGGCAAATGAGAAGACTGATGTTTTCAGCTATGGGGTGGTGATCCTTGAAGTGGCATGTGGTAGGAGGCCAATTGAGAAAGAGGGGCAGAAGATGGTGAATTTGGTGGATTGGGTTTGGGGTTTGCACTCTCAAGGGAGGATCATTGAGGCTGCTGATAGGAGGTTGAATGGGGAGTTCAAGGAAGGGGAAATGAGGAAGCTTTTGCTTTTGGGGCTCAGTTGTGCTAACCCTGATAGTGCTCAAAGGCCTTCCATGAGAAGGGTGTTGCAGATTCTCAACAATGATCAAGGAGTGTCTCTTGTGGTGCCTAAAGTGAAACCAACACTTACTTTTTCCACTTCCCTGCCTTTGAGTCTTGATGAGATTGTCTCAGATGCTGATGAGGAAGAGGTCTGTCCTGGCCAGGTTGTGTGTGAGATCAAAATTGATTGA 1962 0.4867 MSSPTTTIATTFTILFIILLTPTLSLNTTFSFPSFPLRNITLLGDSFLRNGLVGLTRATPVPASSSGTLLYNHPFPTTTTTTPSSLSTTFSFSITNTTSSTSSSTLTFFLNSSHSLSLLFHPSPTLLSLQLSTSNTTTQSTLHLITPNPIITSWLLYNSHNKKLYVYLNYSSSSSSSSSSTSSKPQNPSLAVDLDLDHYFNDSLYVGFSASTLGSTDLVQLMTWSFEFQSFEKPDFINLHPHNGSLSPSTFVASSSTEGNRGKRFVIGLGVGVVVPAFFCLVLVVLGYVSFQKWRGVRRRKGFALGAPGCCPKEFGYKEVKLATKGFHASRVIGKGSFGTVYKALFEASGTVAAVKRSRQYEGRTEFLAELSVIAGLRHKNLVQLLGWCVEKGELLLVYEFMPNGSLDKVLYQECEGGSGTNNNNVLSWFHRVNIAVGLASVLSYLHQECEQRVIHRDIKAGNILLDGSMNPRLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQCGVANEKTDVFSYGVVILEVACGRRPIEKEGQKMVNLVDWVWGLHSQGRIIEAADRRLNGEFKEGEMRKLLLLGLSCANPDSAQRPSMRRVLQILNNDQGVSLVVPKVKPTLTFSTSLPLSLDEIVSDADEEEVCPGQVVCEIKID 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01232 653 Gene3D Transferase(Phosphotransferase) domain 1 402 611 - -
Cca09g01232 653 CDD STKc_IRAK 333 604 - -
Cca09g01232 653 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.7-RELATED 29 635 - -
Cca09g01232 653 Gene3D - 26 122 - -
Cca09g01232 653 PANTHER - 29 635 - -
Cca09g01232 653 Pfam Legume lectin domain 28 117 IPR001220 GO:0030246
Cca09g01232 653 Pfam Legume lectin domain 139 230 IPR001220 GO:0030246
Cca09g01232 653 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 230 IPR013320 -
Cca09g01232 653 ProSiteProfiles Protein kinase domain profile. 327 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01232 653 Pfam Protein kinase domain 327 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01232 653 ProSitePatterns Protein kinases ATP-binding region signature. 333 356 IPR017441 GO:0005524
Cca09g01232 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Cca09g01232 653 Gene3D - 123 228 - -
Cca09g01232 653 Gene3D Phosphorylase Kinase; domain 1 312 401 - -
Cca09g01232 653 SMART serkin_6 327 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01232 653 SUPERFAMILY Protein kinase-like (PK-like) 312 618 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01232 Cca-Chr9 34555648 34557906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01232 25 638 Receptor kinase-like Gene Family AT5G55830 51.740 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca09g01232 Pkinase 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01232 - - gmx:100808744 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01232 09 34555648 34557906 Cca09g01232 09 34555648 34557906 ECH
Cca09g01232 09 34555648 34557906 Cca05g02029 05 40085006 40087875 PCT