Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01230 ATGCCAATTACAAATGTGACAAAAATCACAAGAAAAATTCTCCCAAACAATGCAAAAATTTCAGACAGTGCCAAGGAGATGATTCAACAAAGTGCCACAAAGTTCATAACCTTTGTAACTAGAAAAGCCAAGGAGCGATGCCAAAGCGAATATAGAAAGATTATGAATGTGGAGGATATGTTATGGGCCATACAGAAGCTTGGCTTTGATGACTATGTTGGACCTCTCACTGTTTTCCTCCAACGCTATCGTGACATTGAAAGAGGTGACTCCTCCACTTATCACCCTCCTTTACCACCACCAGTTCATTCTTCTGGACCAAACTTTTCCATGGATCCAAACACAAATACTGAAATGTGTCACCCAAAATGGTGA 375 0.4027 MPITNVTKITRKILPNNAKISDSAKEMIQQSATKFITFVTRKAKERCQSEYRKIMNVEDMLWAIQKLGFDDYVGPLTVFLQRYRDIERGDSSTYHPPLPPPVHSSGPNFSMDPNTNTEMCHPKW 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01230 124 SUPERFAMILY Histone-fold 1 95 IPR009072 GO:0046982
Cca09g01230 124 PRINTS CCAAT-binding transcription factor subunit A signature 28 46 - -
Cca09g01230 124 PRINTS CCAAT-binding transcription factor subunit A signature 47 65 - -
Cca09g01230 124 PRINTS CCAAT-binding transcription factor subunit A signature 66 84 - -
Cca09g01230 124 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 1 95 - -
Cca09g01230 124 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 64 IPR003958 -
Cca09g01230 124 MobiDBLite consensus disorder prediction 90 124 - -
Cca09g01230 124 Gene3D Histone, subunit A 1 96 IPR009072 GO:0046982
Cca09g01230 124 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 95 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01230 Cca-Chr9 34539849 34540223 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01230 1 97 CCAAT-HAP3 Transcription Factor Family AT1G21970 58.586 1.15e-36 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Cca09g01230 CBFD_NFYB_HMF 1.7e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01230 K08065 - ming:122093806 120.168