Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01229 ATGGAGCATGGAGATTCATTGTTTCACCAACCCGCGAAATCACGTTCTGGTTCGACACTCCCCTCACAACAAACAAACACCTATGCAAACATAGAAATTCCCCCACCAAACAACAATGGCCTAATTCTCAATTTTGATGTGCAAGATAATAGCAAGATGCCAATTACAAATGTGACAAAAATCACAAGACGAATTCTTCCAAACAATGCAAAACTTTCAGACAGTGCCAAGGAAATGATTCAACAAAGTGCTACAAAGTACATAACCTTTGTAACTAGAAAAGCCAAGGAGCGATGTCAAAGTGAGTATAGAAAGATTATGAATGTTGAGGATGTGTTATGGGCCATGGAGAAGTTGGGATTTCATGACTATGTTAGGCCTCTCAATATTTTCCTCCAACGTTATCGTGACATTGATGGAGCTGACTATTTTGCTCACACAGTGGACCCTACTCCTTGCACCGACAATAATAATGGACCTAGTTTTGGGGTTGAGCCCAACCTTGTGCCCACCATGGAGATGCTTCATGCCCCTTTACCACCACCAGTTCCTTCTTCTGGATCAAACTTTTCCATGGACCCAAACACAAATATGGAAATATTTGACCCAAATGATGTGAACGAACTCTACTTAGAAGGACTTGGTGTTGATTGCTCGGATGGTGCTTTCACAAACTTTAGCCCCTCTGCTCTCTTCAAATATGATCAAGTGTGA 714 0.416 MEHGDSLFHQPAKSRSGSTLPSQQTNTYANIEIPPPNNNGLILNFDVQDNSKMPITNVTKITRRILPNNAKLSDSAKEMIQQSATKYITFVTRKAKERCQSEYRKIMNVEDVLWAMEKLGFHDYVRPLNIFLQRYRDIDGADYFAHTVDPTPCTDNNNGPSFGVEPNLVPTMEMLHAPLPPPVPSSGSNFSMDPNTNMEIFDPNDVNELYLEGLGVDCSDGAFTNFSPSALFKYDQV 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01229 237 Gene3D Histone, subunit A 45 143 IPR009072 GO:0046982
Cca09g01229 237 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 48 146 - -
Cca09g01229 237 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 52 116 IPR003958 -
Cca09g01229 237 MobiDBLite consensus disorder prediction 1 23 - -
Cca09g01229 237 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Cca09g01229 237 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Cca09g01229 237 PRINTS CCAAT-binding transcription factor subunit A signature 118 136 - -
Cca09g01229 237 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 48 146 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cca09g01229 237 SUPERFAMILY Histone-fold 50 139 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01229 Cca-Chr9 34526671 34529575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01229 34 140 CCAAT-HAP3 Transcription Factor Family AT5G47670 50.926 1.91e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Cca09g01229 CBFD_NFYB_HMF 9.8e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01229 K08065 - pda:103724115 129.798