Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01221 ATGGACGAAGGCGAAGGAGGGTACGGCGAGAGCGGCGATCCTATGGATCAGTTCCACCGTAACGAGGCTATATCCGCCGTTGCCGACGAGGGTTTCTTAGGCGAGGAAGACGACGATTACGAGGACCTTTACAACGACGTCAACGTCGGGGAAGGGTTCCTTCAATCATTGCGGAAGAATGACGATTCAGGGTTCCGAAACGACGACATCGACGAAAAGAAgccaccgccgccgccgccgGTTCCTGATGCGGCCGGTGTTTCGATCCCGGGTGTCGGTGGCGGTGGAGAGGGTGGCGTTGGTGTTGGAAGCGGGGTTGTGGAATCTAGGGTTCCGGCGAGAGTTGATGGGTTTCAGAATCAAGGGTTTAGAGGGAACGAGGTGGGTGCCAAAGGTGGAATTAGGGTTGAACTGGGGCATCAATCAGGGAAATTGAGTGAAATTGAGGAGCAGGGTGGTAACGATGGTGCAGCGGTGCAGGGGATTGGGCAGCCACCACATGGCGGAGTTGTTGGGAGTGTGGGGAATGATGGTTTGCTGAGACAAGGTCAAGTTGGGGGTGGTGGAGGAGGAGGGAATGCTAATAGGGTTGGTGGAAACGGTGTTGGGAACAGTGTGACTGCTGTTAGTAATGTTAgtgttggaggagttggaggtggtggtggtggtgctgctgctgccgcttctggtggtACTATATTGTTTGTGGGTGATTTGCATTGGTGGACTACGGATGCAGAGCTGGAAGCTGAGCTCAGTAAGTATGGGCCTGTGAAGGAGGTGAAGTTTTATGATGAGAAGGCAAGTGGGAAGTCGAAGGGGTATTGCCAGGTTGAGTTTTATGAGCCTGCTTCTGCCACTTCTTGTAAGGAAGGGATGAATGGGCATGTTTTTAACGGGAGGCCTTGTGTTGTTGCGTTTGCATCACCTTTTACAGTTAAAAAAATGGGGGAGGCTCAGATAAATAGGAATCAGCAGATGAATCCATCTGCTGTTCCACAGGGAAGGAGGGGGGCTGCTGATGCAGGGGCTAAGCCTGGTGGGAGCAATATTTCAACGGGTGGTAATTACCAAGGTGGAGATGGGAATAGAGGTTATGGGAGAGGAGGTAACTGGGGGAGGGGGAATAATAATGCCATGGGGAATCGGGGGCCTGTTAATCCAATGAGGAATAGGGGTGGGGGGATGGGTGGCAGAGGTATAATGGGTCATGGTGGAAATGGATTTGGGCAGGGTATGGGTGGTACTCCACCACTGTTGCATCCTCAGTCAATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGTCCCATGGGTAGAATGGGCAATTATGGAGGCTTTCCCGGTGCTCCAACACCACCATTCTCTGGTATTTTACCTTCATTCCCTGGTGTGGGAGGTGTTGGTTTGCCTGGAGTGGCACCTCATGTCAATCCGGCATTTTTCGGAAGAGGGATGCCTGTGAATGGTATGGGGATGATGCCCACATCTGGCATGGATGGTCCTAATATGGGAATGTGGTCCGATCCGAATATGGGTGGATGGGGTGGTGAAGAGCCTGGTGGTGGTAAGGCTGGAGAGTCAAGTTATGGGGAGGAAGCTGCATCAGATCATCAGTATGGTGAGGTGAGTCATGATAGAGCTGGGTGGCCAATGAGGGATAAAGATCGAGGGTCAGAAAGGGACTGGTCTGGTTCTTCTGAGCGAAGGTACAGGGATGATAGAGATCAAGGATATGAGAGAGATGCCCCTAGAGAAAAAGAGGTGGGCCATGACCATGAATGGTCAGAAAGAAGGCATCGTGATGATAGAGAAATGGGCCGTGAACGATCTCGTGATCGTGATCGTGAACGATCTCGTGACCGTGATCAAGACCGTGAAAGGGATCGAGACCGTGACAGGCACAGAGAAGACAGGGACAGGTATGCAGATCATCATAGGTACAGAGACCGGGAAGCAGAGCATGATGATGAGTGGGAGAGGGGACGGTCATCAAGGACTCACAGCAAGTCACGGTTATCACAAGAGGAGGAACACCATTCTAGGTCGAGAGATGCTGATTATGGGAAGAGGCGGCGGCTTACTTCTGAATAA 2094 0.4971 MDEGEGGYGESGDPMDQFHRNEAISAVADEGFLGEEDDDYEDLYNDVNVGEGFLQSLRKNDDSGFRNDDIDEKKPPPPPPVPDAAGVSIPGVGGGGEGGVGVGSGVVESRVPARVDGFQNQGFRGNEVGAKGGIRVELGHQSGKLSEIEEQGGNDGAAVQGIGQPPHGGVVGSVGNDGLLRQGQVGGGGGGGNANRVGGNGVGNSVTAVSNVSVGGVGGGGGGAAAAASGGTILFVGDLHWWTTDAELEAELSKYGPVKEVKFYDEKASGKSKGYCQVEFYEPASATSCKEGMNGHVFNGRPCVVAFASPFTVKKMGEAQINRNQQMNPSAVPQGRRGAADAGAKPGGSNISTGGNYQGGDGNRGYGRGGNWGRGNNNAMGNRGPVNPMRNRGGGMGGRGIMGHGGNGFGQGMGGTPPLLHPQSMMNQGFDPAFGGPMGRMGNYGGFPGAPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPTSGMDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDHQYGEVSHDRAGWPMRDKDRGSERDWSGSSERRYRDDRDQGYERDAPREKEVGHDHEWSERRHRDDREMGRERSRDRDRERSRDRDQDRERDRDRDRHREDRDRYADHHRYRDREAEHDDEWERGRSSRTHSKSRLSQEEEHHSRSRDADYGKRRRLTSE 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01221 697 MobiDBLite consensus disorder prediction 500 697 - -
Cca09g01221 697 CDD RRM_CFIm68_CFIm59 234 307 - -
Cca09g01221 697 MobiDBLite consensus disorder prediction 538 697 - -
Cca09g01221 697 MobiDBLite consensus disorder prediction 61 76 - -
Cca09g01221 697 Gene3D - 221 317 IPR012677 -
Cca09g01221 697 SMART rrm1_1 233 306 IPR000504 GO:0003723
Cca09g01221 697 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 232 310 IPR000504 GO:0003723
Cca09g01221 697 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 696 IPR034772 -
Cca09g01221 697 MobiDBLite consensus disorder prediction 151 170 - -
Cca09g01221 697 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 303 IPR000504 GO:0003723
Cca09g01221 697 MobiDBLite consensus disorder prediction 327 417 - -
Cca09g01221 697 SUPERFAMILY RNA-binding domain, RBD 229 318 IPR035979 GO:0003676
Cca09g01221 697 MobiDBLite consensus disorder prediction 1 27 - -
Cca09g01221 697 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 696 - -
Cca09g01221 697 MobiDBLite consensus disorder prediction 54 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01221 Cca-Chr9 34338331 34344922 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01221 210 308 Eukaryotic Initiation Factors Gene Family AT4G34110 30.303 7.14e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01221 K14398 - gmx:100782869 963.37