Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01218 ATGGCGGACTCCGACAACGACTCCGGCGGCGCGCACCACGGCGGCAAGGGAAGCGAGATGTCGCCGCGGGAGCAGGACGGGTCCCTGCCGATCGCGAACGTGAGCCGCATCATGAAGAAGGCGCTACCGGCGAACGCGAAGATCTCGAAGGACGCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACGATCAACGGCGACGACCTCCTCTGGGCGATGACCACTCTCGGCTTCGAGGACTACGTGGAGCCTCTCAAAGTGTACCTCCAGCGCTTCCGGGAGATGGAGGGAGAGAAGACCGTGGCGGCGCGTGACAAGGACGCGCCTCCTGCTTCTAATGCCAACAACAGTGCCTACGACACTGCTAGTTATGGTGCCGCTGGAATCATGATGCATCAGGGACACGTGTACGGTTCTCCTGGCTTCCATCAAGTGGCTGGCGGGGGTGCCGCTCTTAAAGGTGGGCCTGCTTATCCTGGGCCTGGATCCAATGCCGGTAGGCCCAGATAG 567 0.6226 MADSDNDSGGAHHGGKGSEMSPREQDGSLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEKTVAARDKDAPPASNANNSAYDTASYGAAGIMMHQGHVYGSPGFHQVAGGGAALKGGPAYPGPGSNAGRPR 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01218 188 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Cca09g01218 188 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Cca09g01218 188 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Cca09g01218 188 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Cca09g01218 188 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cca09g01218 188 SUPERFAMILY Histone-fold 25 132 IPR009072 GO:0046982
Cca09g01218 188 MobiDBLite consensus disorder prediction 1 31 - -
Cca09g01218 188 Gene3D Histone, subunit A 16 143 IPR009072 GO:0046982
Cca09g01218 188 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 153 - -
Cca09g01218 188 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 153 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cca09g01218 188 MobiDBLite consensus disorder prediction 167 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01218 Cca-Chr9 34311437 34312003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01218 1 122 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.885 8.33e-73 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Cca09g01218 CBFD_NFYB_HMF 2.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01218 K08065 - gmx:100813169 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01218 09 34311437 34312003 Cca09g01218 09 34311437 34312003 ECH