Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01202 ATGTCTTCCACCAAGAGAAAATCTTGCATTGAAGCACCCACTAGTGAAAGGAAGAGGTCTCGCATGGTGAAAAAGAAGAAAGAAGAAGAGAGACATTGGGGCTACTCAACAAATTTGATGATTTATGATGACCCATGGAAGATTAAAAAGGAGCTCACAAAGAGTGATCTTGGAAACTTAAGCAGACTCTTGCTCTCCAAAGAGTTGATTGAAGAATTGGTGTTGCCTGTGTTGACCCTTGAATCCCAAAGAGAGGCTATGAATGAAAAAGGAACCAAAATAAGCATCTGGGATGTGGACACCCAATCCATGCATTATCTTGTCTTCAAGTTTTGGTCCTCTTCAAGAAGCTATGTTTTCATTGACAATTGGACTAAGGATTTTGTGCTGGGAAGGGGTTTGAAGATAAGAGATGAAATTGGATTTCATTGGGATCCCTACAAGAATAGGTTTGATTTTTCTATTCTTGTTCGTGCTTAG 480 0.3958 MSSTKRKSCIEAPTSERKRSRMVKKKKEEERHWGYSTNLMIYDDPWKIKKELTKSDLGNLSRLLLSKELIEELVLPVLTLESQREAMNEKGTKISIWDVDTQSMHYLVFKFWSSSRSYVFIDNWTKDFVLGRGLKIRDEIGFHWDPYKNRFDFSILVRA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01202 159 MobiDBLite consensus disorder prediction 10 25 - -
Cca09g01202 159 MobiDBLite consensus disorder prediction 1 25 - -
Cca09g01202 159 SUPERFAMILY DNA-binding pseudobarrel domain 44 155 IPR015300 -
Cca09g01202 159 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 3 158 - -
Cca09g01202 159 CDD B3_DNA 46 156 IPR003340 GO:0003677
Cca09g01202 159 Gene3D - 45 155 IPR015300 -
Cca09g01202 159 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 3 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01202 Cca-Chr9 33851521 33852000 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01202 44 151 B3 DNA Binding Superfamily AT3G26790 29.464 4.63e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01202 - - gsj:114396848 244.588