Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01200 ATGCCTTCCACCAAGAGAAAATCTTGCATCGAAGCACCCACTAATGAAAGGAAGAGGTCTCGCATGGTGAAAAAGAAGAAAGAAGAAGGGAGACATTGGGGCTACTCAACAAATTTGATGATTTATGATGACCCATGGAAGATTAAAAAGGAGCTCACAAAGAGTGATCTTGGAAACTTAAGCAGACTCTTGCTCTCCAAAGAGTTGATTGAAGAATTGGTGTTGCCTGTGTTGACCCTTGAATCCCAAAGAGAGGCTATGAATGAAAAAGGAACCAAAATAAGCATTTGGGATGTGGACACCCAATCCATGCATTATCTTGTCTTCAAGTTTTGGTCCTCTTCAAGAAGCTATGTTTTCATTGACAATTGGACTAAGGATTTTGTGCTGAGAAGGGGTTTGAAGATAGGAGATGAAATTGGATTTCATTGGGATCCCTACAAGAATAGGTTTGATTTTTCTATTCTTGTTCGTGCTTAA 480 0.3958 MPSTKRKSCIEAPTNERKRSRMVKKKKEEGRHWGYSTNLMIYDDPWKIKKELTKSDLGNLSRLLLSKELIEELVLPVLTLESQREAMNEKGTKISIWDVDTQSMHYLVFKFWSSSRSYVFIDNWTKDFVLRRGLKIGDEIGFHWDPYKNRFDFSILVRA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01200 159 CDD B3_DNA 46 156 IPR003340 GO:0003677
Cca09g01200 159 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 158 - -
Cca09g01200 159 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 158 - -
Cca09g01200 159 Gene3D - 45 155 IPR015300 -
Cca09g01200 159 MobiDBLite consensus disorder prediction 1 23 - -
Cca09g01200 159 SUPERFAMILY DNA-binding pseudobarrel domain 44 155 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01200 Cca-Chr9 33817934 33818413 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01200 48 142 B3 DNA Binding Superfamily AT1G25560 32.292 3.65e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01200 - - gsj:114396848 245.743